Search result

BaseInfo

ncRNA ID	novel_egu_miR629
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr7:10472386-10472582 [-]
Reference genome	EG5
Source	SRR3042542
Length	24
Mature sequence(if miRNA)	1 - AGUAGUUUUGAAGUAGUAGAUCAU - 24
Stem-loop(if miRNA)	--         UC G       G  A     U                GA    -  -       A           A       --AU   -      UUA   GAUCUACUA  U AAAAUUA UU UAUAU AAAAAUCAUAUGAUUU  AGAU CC CUAGUCU UGUAUCAAGUG UCAAAGA    AUA UUUAAU   A   |||||||||  | ||||||| || ||||| ||||||||||||||||  |||| || ||||||| ||||||||||| |||||||    ||| ||||||   CUAGAUGAU  A UUUUGAU AA AUAUG UUUUUAGUAUACUAAA  UCUA GG GAUUAGA ACGUAGUUUAU AGUUUUU    UGU AGAUUA   U UA         GA G       G  C     U                --    U  A       C           C       AAUC   C      UUU
Stem-loop sequence	GAUCUACUAUCUGAAAAUUAGUUAUAUAUUAAAAAUCAUAUGAUUUGAAGAUCCCUAGUCUAUGUAUCAAGUGAUCAAAGAAUAUAUUUAAUUUAAUUUUAUUAGACUGUCUAAUUUUUGACUAUUUGAUGCACAGAUUAGAGGUAUCUAAAUCAUAUGAUUUUUUGUAUACAAGUAGUUUUGAAGUAGUAGAUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_019847239.1	ncRNA:24   UACUAGAUGAUGAAGUUUUGAUGA   1   =|||||||||=|*||||||||||| targets:3507   GUGAUCUACUGCCUCAAAACUACU   3530 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis regulator of telomere elongation helicase 1 (LOC105031928), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019847213.1	ncRNA:24   UACUAGAUGAUGAAGUUUUGAUGA   1   =|||||||||=|*||||||||||| targets:3980   GUGAUCUACUGCCUCAAAACUACU   4003 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis regulator of telomere elongation helicase 1 (LOC105031928), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019847185.1	ncRNA:24   UACUAGAUGAUGAAGUUUUGAUGA   1   =|||||||||=|*||||||||||| targets:3983   GUGAUCUACUGCCUCAAAACUACU   4006 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis regulator of telomere elongation helicase 1 (LOC105031928), transcript variant X1, mRNA	NA	coding protein	psRNATarget