Search result

BaseInfo

ncRNA ID	novel_egu_miR616
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr11:8708170-8708221 [+]
Reference genome	EG5
Source	SRR3042545
Length	24
Mature sequence(if miRNA)	1 - AAAGAUUGGUUGGUUGGCAUUUGA - 24
Stem-loop(if miRNA)	--    AUU   U      -      A   AAAG   GGU GGUUGG CAUUUG A   ||||   ||| |||||| ||||||   UUUC   CCA CCAACU GUGAAC U UA    GAU   -      A      U
Stem-loop sequence	AAAGAUUGGUUGGUUGGCAUUUGAAUUCAAGUGAUCAACCACCUAGCUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JO096673.1	ncRNA:24   AGUU--UACGGUUGGUUGGUUAGAAA   1   **||--=|||||=||||||||||||| targets:196   AGAACCGUGCCAGCCAACCAAUCUUU   221 Target Full Sequence	1.0	TSA: Elaeis guineensis isotig09446.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
XM_019848478.1	ncRNA:24   AGU----UUACGGUUGGUUGGUUAGAAA   1   |||----||*|||*|||||||||||||* targets:2291   UCAGAGGAAGGCCUACCAACCAAUCUUC   2318 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis putative disease resistance protein At3g14460 (LOC105040148), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019848480.1	ncRNA:24   AGU----UUACGGUUGGUUGGUUAGAAA   1   |||----||*|||*|||||||||||||* targets:2291   UCAGAGGAAGGCCUACCAACCAAUCUUC   2318 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis putative disease resistance protein At3g14460 (LOC105040148), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019848479.1	ncRNA:24   AGU----UUACGGUUGGUUGGUUAGAAA   1   |||----||*|||*|||||||||||||* targets:2291   UCAGAGGAAGGCCUACCAACCAAUCUUC   2318 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis putative disease resistance protein At3g14460 (LOC105040148), transcript variant X2, mRNA	NA	coding protein	psRNATarget