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BaseInfo

ncRNA ID novel_egu_miR614
Species Elaeis guineensis
Class miRNA
Genome position Chr15:7793211-7793348 [-]
Reference genome EG5
Source SRR3042545
Length 21
Mature sequence(if miRNA) 118 - UUCGCGCGAAAGAAUGAUUCA - 138
Stem-loop(if miRNA) --              -      A    C        C  C  A   ACC  U   UCGCAUCUUACACCGC
  UUCGCGCGAAAGAA UGAUUC UCUU UUUUUUUC GC AC UCA   GU GGA                U
  |||||||||||||| |||||| |||| |||||||| || || |||   || |||
  AGGCGCGCUUUUUU ACUAAG AGGA AGAAAAAG UG UG AGU   GG CGA                A
GA              U      -    A        -  C  C   --C  -   AGCUCUAAACACAUCC
Stem-loop sequence UUCGCGCGAAAGAAUGAUUCAUCUUCUUUUUUUCCGCCACAUCAACCGUUGGAUCGCAUCUUACACCGCUACCUACACAAAUCUCGAAGCGGCUGACGUCGUGAAAAAGAAAGGAGAAUCAUUUUUUUCGCGCGGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01009932.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |||||||||||||||||||||
targets:72   UGAAUCAUUCUUUCGCGCGAA   92

0.0 TSA: Elaeis guineensis CL3494.Contig2_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01009933.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |||||||||||||||||||||
targets:573   UGAAUCAUUCUUUCGCGCGAA   593

0.0 TSA: Elaeis guineensis CL3494.Contig3_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01047028.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  *||||||||||||||||||||
targets:59   CGAAUCAUUCUUUCGCGCGAA   79

0.0 TSA: Elaeis guineensis Unigene28869_All transcribed RNA sequence NA coding protein psRNATarget
XM_010937713.2
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  *||||||||||||||||||||
targets:162   CGAAUCAUUCUUUCGCGCGAA   182

0.0 PREDICTED: Elaeis guineensis uncharacterized LOC105055750 (LOC105055750), transcript variant X3, mRNA NA coding protein psRNATarget
XM_019853242.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  ||=||||||||||||||||||
targets:110   UGGAUCAUUCUUUCGCGCGAA   130

1.0 PREDICTED: Elaeis guineensis uracil phosphoribosyltransferase (LOC105052170), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019850299.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |*=||||||||||||||||||
targets:267   UCGAUCAUUCUUUCGCGCGAA   287

1.0 PREDICTED: Elaeis guineensis oxysterol-binding protein-related protein 3A (LOC105044388), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010922264.2
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |*=||||||||||||||||||
targets:263   UCGAUCAUUCUUUCGCGCGAA   283

1.0 PREDICTED: Elaeis guineensis oxysterol-binding protein-related protein 3A (LOC105044388), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019852876.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |*=||||||||||||||||||
targets:188   UCGAUCAUUCUUUCGCGCGAA   208

1.0 PREDICTED: Elaeis guineensis uncharacterized LOC105052056 (LOC105052056), transcript variant X4, mRNA NA coding protein psRNATarget
XM_019852873.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |*=||||||||||||||||||
targets:184   UCGAUCAUUCUUUCGCGCGAA   204

1.0 PREDICTED: Elaeis guineensis uncharacterized LOC105052056 (LOC105052056), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019847654.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  **=||||||||||||||||||
targets:681   CCGAUCAUUCUUUCGCGCGAA   701

1.0 PREDICTED: Elaeis guineensis probable carboxylesterase 2 (LOC109505241), partial mRNA NA coding protein psRNATarget
XM_010930879.2
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |||||||||||||=|||||||
targets:48   UGAAUCAUUCUUUUGCGCGAA   68

1.5 PREDICTED: Elaeis guineensis enhancer of rudimentary homolog (LOC105050745), mRNA NA coding protein psRNATarget
XM_010911715.2
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  **|||||||||||||||=|||
targets:265   CCAAUCAUUCUUUCGCGUGAA   285

1.5 PREDICTED: Elaeis guineensis uncharacterized LOC105035988 (LOC105035988), mRNA NA coding protein psRNATarget
XM_019848371.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  **|||||||||||||||=|||
targets:223   ACAAUCAUUCUUUCGCGUGAA   243

1.5 PREDICTED: Elaeis guineensis eIF-2-alpha kinase GCN2 (LOC105038626), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010907634.2
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |*||||||||||||||*||||
targets:4512   UUAAUCAUUCUUUCGCACGAA   4532

1.5 PREDICTED: Elaeis guineensis uncharacterized LOC105033009 (LOC105033009), mRNA NA coding protein psRNATarget
XM_010937782.2
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  **|||||||||||*|||||||
targets:86   CAAAUCAUUCUUUGGCGCGAA   106

1.5 PREDICTED: Elaeis guineensis transcription factor PIF1-like (LOC105055793), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010937783.2
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  **|||||||||||*|||||||
targets:86   CAAAUCAUUCUUUGGCGCGAA   106

1.5 PREDICTED: Elaeis guineensis transcription factor PIF1-like (LOC105055793), transcript variant X2, mRNA NA coding protein psRNATarget
GBSV01043944.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  ||||||=*|||||||||||||
targets:173   UGAAUCGAUCUUUCGCGCGAA   193

2.0 TSA: Elaeis guineensis Unigene25785_All transcribed RNA sequence NA coding protein psRNATarget
XM_019853627.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |*|*|||*|||||||||||||
targets:7   UCACUCACUCUUUCGCGCGAA   27

2.0 PREDICTED: Elaeis guineensis pentatricopeptide repeat-containing protein At5g62370 (LOC105054344), transcript variant X3, mRNA NA coding protein psRNATarget
XM_019853628.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |*|*|||*|||||||||||||
targets:7   UCACUCACUCUUUCGCGCGAA   27

2.0 PREDICTED: Elaeis guineensis pentatricopeptide repeat-containing protein At5g62370 (LOC105054344), transcript variant X4, mRNA NA coding protein psRNATarget
XM_019853625.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |*|*|||*|||||||||||||
targets:7   UCACUCACUCUUUCGCGCGAA   27

2.0 PREDICTED: Elaeis guineensis pentatricopeptide repeat-containing protein At5g62370 (LOC105054344), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019853626.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |*|*|||*|||||||||||||
targets:7   UCACUCACUCUUUCGCGCGAA   27

2.0 PREDICTED: Elaeis guineensis pentatricopeptide repeat-containing protein At5g62370 (LOC105054344), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010929840.2
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  ||||||*||||||=|||||||
targets:92   UGAAUCCUUCUUUUGCGCGAA   112

2.5 PREDICTED: Elaeis guineensis putative BPI/LBP family protein At1g04970 (LOC105050003), mRNA NA coding protein psRNATarget
XM_010913158.2
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  ||=||||||*|||||||||||
targets:249   UGGAUCAUUAUUUCGCGCGAA   269

2.5 PREDICTED: Elaeis guineensis G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 (LOC105037505), partial mRNA NA coding protein psRNATarget
XM_019846481.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |*|=|||||||||||=|||||
targets:35   UCAGUCAUUCUUUCGUGCGAA   55

2.5 PREDICTED: Elaeis guineensis cinnamoyl-CoA reductase 2-like (LOC105032899), mRNA NA coding protein psRNATarget
XM_010943873.2
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  ||||||*||||||*|||||||
targets:11   UGAAUCCUUCUUUGGCGCGAA   31

2.5 PREDICTED: Elaeis guineensis protein EDS1B-like (LOC105060252), mRNA NA coding protein psRNATarget
XM_019846257.1
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |*|||=||||||||*||||||
targets:46   UCAAUUAUUCUUUCUCGCGAA   66

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105055602 (LOC105055602), mRNA NA coding protein psRNATarget
XM_010919314.2
ncRNA:21   ACUUAGUAAGAAAGCGCGCUU   1
  |*=||||||||||*|||||||
targets:1872   UCGAUCAUUCUUUGGCGCGAA   1892

2.5 PREDICTED: Elaeis guineensis protein indeterminate-domain 7-like (LOC105042196), mRNA NA coding protein psRNATarget
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