Search result

BaseInfo

ncRNA ID	novel_egu_miR613
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr1:4182400-4182491 [+]
Reference genome	EG5
Source	SRR3042545;SRR3042547;SRR3042548
Length	22
Mature sequence(if miRNA)	1 - UGACAGAAGAGAGUGAGCACAU - 22
Stem-loop(if miRNA)	--       -     -         U     GUU   UU     A  GG   UGACAGA AGAGA GUGAGCACA AUGGU   UUC  GCAUG GG  A   ||||||| ||||| ||||||||| |||||   |||  ||||| ||   ACUGUCU UCUCU CACUCGUGU UAUCG   AAG  CGUAC CU  G CG       G     U         U     ---   CU     -  AA
Stem-loop sequence	UGACAGAAGAGAGUGAGCACAUAUGGUGUUUUCUUGCAUGAGGGGAGAAUCCAUGCUCGAAGCUAUUUGUGCUCACUUCUCUGUCUGUCAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010935356.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **|||||||||||||||||||| targets:862   UCGUGCUCACUCUCUUCUGUCA   883 Target Full Sequence	0.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 7 (LOC105053992), mRNA	NA	coding protein	psRNATarget
XM_010930530.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   =|||||||*||||||||||||| targets:855   GUGUGCUCUCUCUCUUCUGUCA   876 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105050485), mRNA	NA	coding protein	psRNATarget
GBSV01026229.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:227   CUGUGCUCUCUCUCUUCUGUCA   248 Target Full Sequence	1.0	TSA: Elaeis guineensis Unigene8059_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010930141.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:904   CUGUGCUCUCUCUCUUCUGUCA   925 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105050210), mRNA	NA	coding protein	psRNATarget
XM_010945250.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:1013   CUGUGCUCUCUCUCUUCUGUCA   1034 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010945248.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:1017   CUGUGCUCUCUCUCUUCUGUCA   1038 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010945249.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:1034   CUGUGCUCUCUCUCUUCUGUCA   1055 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010945247.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:1048   CUGUGCUCUCUCUCUUCUGUCA   1069 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010915611.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:1087   CUGUGCUCUCUCUCUUCUGUCA   1108 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 17 (LOC105039459), mRNA	NA	coding protein	psRNATarget
XM_010919254.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:1667   CUGUGCUCUCUCUCUUCUGUCA   1688 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 18 (LOC105042144), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010919253.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:1825   CUGUGCUCUCUCUCUUCUGUCA   1846 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 18 (LOC105042144), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010928539.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:1856   UUGUGCUCUCUCUCUUCUGUCA   1877 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 16 (LOC105049005), mRNA	NA	coding protein	psRNATarget
XM_010929438.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:1922   UUGUGCUCUCUCUCUUCUGUCA   1943 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 16 (LOC105049697), mRNA	NA	coding protein	psRNATarget
XM_010914718.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:2178   UUGUGCUCUCUCUCUUCUGUCA   2199 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 16 (LOC105038812), mRNA	NA	coding protein	psRNATarget
JO091743.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1   GUGCUCUCUCUCUUCUGUCA   20 Target Full Sequence	1.0	TSA: Elaeis guineensis isotig04489.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO091744.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1   GUGCUCUCUCUCUUCUGUCA   20 Target Full Sequence	1.0	TSA: Elaeis guineensis isotig04490.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
GBSV01028385.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:348   UCGUGCUCUCUCUCUUCUGUCA   369 Target Full Sequence	1.0	TSA: Elaeis guineensis Unigene10218_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01016136.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   =*||||||*||||||||||||| targets:725   GCGUGCUCUCUCUCUUCUGUCA   746 Target Full Sequence	1.0	TSA: Elaeis guineensis CL6026.Contig1_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010921288.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:1041   UCGUGCUCUCUCUCUUCUGUCA   1062 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 7 (LOC105043657), mRNA	NA	coding protein	psRNATarget
XM_010930436.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   =*||||||*||||||||||||| targets:1593   GCGUGCUCUCUCUCUUCUGUCA   1614 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 12 (LOC105050427), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010930434.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   =*||||||*||||||||||||| targets:1599   GCGUGCUCUCUCUCUUCUGUCA   1620 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 12 (LOC105050427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010930433.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   =*||||||*||||||||||||| targets:1731   GCGUGCUCUCUCUCUUCUGUCA   1752 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 12 (LOC105050427), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010915503.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   =*||||||*||||||||||||| targets:1872   GCGUGCUCUCUCUCUUCUGUCA   1893 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 12 (LOC105039362), mRNA	NA	coding protein	psRNATarget
XM_010930802.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   ***|||||*||||||||||||| targets:734   UCAUGCUCUCUCUCUUCUGUCA   755 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding protein 1 (LOC105050687), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JO098039.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   =**|||||*||||||||||||| targets:590   GCAUGCUCUCUCUCUUCUGUCA   611 Target Full Sequence	1.0	TSA: Elaeis guineensis isotig10812.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
XM_010945647.2	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   =**|||||*||||||||||||| targets:675   GCAUGCUCUCUCUCUUCUGUCA   696 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis squamosa promoter-binding protein 1-like (LOC105061560), mRNA	NA	coding protein	psRNATarget