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BaseInfo

ncRNA ID novel_egu_miR597
Species Elaeis guineensis
Class miRNA
Genome position Chr13:14159488-14159570 [-]
Reference genome EG5
Source SRR3042545
Length 21
Mature sequence(if miRNA) 63 - UUUCAAAAUGAAGUCGGCAAG - 83
Stem-loop(if miRNA) --        -            -               CAC
  UUUCAAAA UGAAGUCGGCAA GUGGUUUGCCGACUU   U
  |||||||| |||||||||||| |||||||||||||||   U
  AAAGUUUU ACUUCAGCCGUU CACCAAACGGCUGAA   A
AA        U            U               UUA
Stem-loop sequence UUUCAAAAUGAAGUCGGCAAGUGGUUUGCCGACUUCACUUAAUUAAGUCGGCAAACCACUUUGCCGACUUCAUUUUUGAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01011317.1
ncRNA:21   GAACGGCUGAAGUAAAACUUU   1
  ****=||||||||||||||||
targets:812   AACAUCGACUUCAUUUUGAAA   832

3.0 TSA: Elaeis guineensis CL4042.Contig3_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01011316.1
ncRNA:21   GAACGGCUGAAGUAAAACUUU   1
  ****=||||||||||||||||
targets:812   AACAUCGACUUCAUUUUGAAA   832

3.0 TSA: Elaeis guineensis CL4042.Contig2_All transcribed RNA sequence NA coding protein psRNATarget