Search result

BaseInfo

ncRNA ID novel_egu_miR594
Species Elaeis guineensis
Class miRNA
Genome position Chr1:25637356-25637542 [+]
Reference genome EG5
Source SRR3042545
Length 24
Mature sequence(if miRNA) 164 - AAGGAUUUAUAGUGGUUCGGUGCU - 187
Stem-loop(if miRNA) --A        U  UA            -AUUA    UCACAAGGAAUGUGCUCAACUUGAUGAGUGAGGUGAGUUAAUUAACAAUGACAAAAG
   AUUGGAUC CU  AAAUUUUUAGUA     GUGC                                                         A
   |||||||| ||  ||||||||||||     ||||
   UGGCUUGG GA  UUUAGGAAUUAU     AUAC                                                         U
UCG        U  UA            AAACG    GAACGUAUAAAAAAAAAAAUAACACGAGAUAUGAACAAGUAAACAAUUAAUACAAAC
Stem-loop sequence AAUUGGAUCUCUUAAAAUUUUUAGUAAUUAGUGCUCACAAGGAAUGUGCUCAACUUGAUGAGUGAGGUGAGUUAAUUAACAAUGACAAAAGAUCAAACAUAAUUAACAAAUGAACAAGUAUAGAGCACAAUAAAAAAAAAAAUAUGCAAGCAUAGCAAAUAUUAAGGAUUUAUAGUGGUUCGGUGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01018245.1
ncRNA:24   UCGUGGCUUGGUGAUAUUUAGGAA   1
  ||||||||||||||||||||||||
targets:194   AGCACCGAACCACUAUAAAUCCUU   217

0.0 TSA: Elaeis guineensis Unigene73_All transcribed RNA sequence NA coding protein psRNATarget