ncRNA ID | novel_egu_miR578 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr5:16903622-16903834 [+] |
Reference genome | EG5 |
Source | SRR3042544 |
Length | 24 |
Mature sequence(if miRNA) | 190 - UUUGAGAUAGUAGAUCACAUUCAA - 213 |
Stem-loop(if miRNA) |
--AAACA                     A        AAAA                    A      AUCAAUA                 U  -------GA    CUA        UGAUCUACUAUCUCAAAAUUG UUGUACAC    AAAAAUCAUAUGAUUUGGAG CCCCUA       CAUCAAGUAGUCAAAAA UG         CAGU   A        ||||||||||||||||||||| ||||||||    |||||||||||||||||||| ||||||       ||||||||||||||||| ||         ||||   A        ACUAGAUGAUAGAGUUUUGAC AACGUGUG    UUUUUAGUAUACUAAACUUC GGGGAU       GUAGUUCAUUAGUUUUU AU         GUCA   U AACUUAC                     A        ---A                    C      CGAAUAC                 U  AUAAAUUAA    AAA |
Stem-loop sequence | AAACAUGAUCUACUAUCUCAAAAUUGAUUGUACACAAAAAAAAAUCAUAUGAUUUGGAGACCCCUAAUCAAUACAUCAAGUAGUCAAAAAUUGGACAGUCUAAAUAAAACUGAAUUAAAUAUAUUUUUUGAUUACUUGAUGCAUAAGCUAGGGGCCUUCAAAUCAUAUGAUUUUUAGUGUGCAAACAGUUUUGAGAUAGUAGAUCACAUUCAA |