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BaseInfo

ncRNA ID novel_egu_miR570
Species Elaeis guineensis
Class miRNA
Genome position Chr4:25557702-25557768 [+]
Reference genome EG5
Source SRR3042544
Length 24
Mature sequence(if miRNA) 1 - CCGGGAUUCAUCGGAGAAGAAGAC - 24
Stem-loop(if miRNA) --    GA     -            CUCCCAUC
  CCGG  UUCAU CGGAGAAGAAGA        C
  ||||  ||||| ||||||||||||
  GGUU  GGGUA GUUUUUUUUUCU        U
CG    UC     U            UUUUCUUG
Stem-loop sequence CCGGGAUUCAUCGGAGAAGAAGACUCCCAUCCUGUUCUUUUUCUUUUUUUUUGUAUGGGCUUUGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010912387.2
ncRNA:24   CAGAAGAAGAGGCUACUUAGGGCC   1
  *|*||||||**|||||||||||||
targets:1448   CUAUUCUUCGACGAUGAAUCCCGG   1471

2.0 PREDICTED: Elaeis guineensis L-type lectin-domain containing receptor kinase S.4-like (LOC105036636), mRNA NA coding protein psRNATarget
XM_010934039.2
ncRNA:24   CAGAAGAAGAGGCUACUUAGGGCC   1
  *||*|||*||||*|||||||||||
targets:216   UUCCUCUACUCCAAUGAAUCCCGG   239

2.5 PREDICTED: Elaeis guineensis cell division control protein 48 homolog B (LOC105053038), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010934038.2
ncRNA:24   CAGAAGAAGAGGCUACUUAGGGCC   1
  *||*|||*||||*|||||||||||
targets:216   UUCCUCUACUCCAAUGAAUCCCGG   239

2.5 PREDICTED: Elaeis guineensis cell division control protein 48 homolog B (LOC105053038), transcript variant X1, mRNA NA coding protein psRNATarget