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BaseInfo

ncRNA ID novel_egu_miR565
Species Elaeis guineensis
Class miRNA
Genome position Chr3:4922763-4922847 [+]
Reference genome EG5
Source SRR3042544;SRR3042545;SRR3042547;SRR3042548
Length 21
Mature sequence(if miRNA) 1 - UGACAGAAGAGAGUGAGCACC - 21
Stem-loop(if miRNA) --        -    -        C      GCU   UU     A
  UGACAGAA GAGA GUGAGCAC CAUGGU   UUC  GCAUG C
  |||||||| |||| |||||||| ||||||   |||  |||||
  ACUGUCUU CUCU CACUCGUG GUAUCG   AAG  CGUAC C
CA        U    U        U      ---   CU     U
Stem-loop sequence UGACAGAAGAGAGUGAGCACCCAUGGUGCUUUCUUGCAUGACCUCAUGCUCGAAGCUAUGUGUGCUCACUUCUCUUUCUGUCAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010935356.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:863   CGUGCUCACUCUCUUCUGUCA   883

0.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 7 (LOC105053992), mRNA NA coding protein psRNATarget
JO091743.1
ncRNA:20   CACGAGUGAGAGAAGACAGU   1
  ||||||*|||||||||||||
targets:1   GUGCUCUCUCUCUUCUGUCA   20

1.0 TSA: Elaeis guineensis isotig04489.Elguifruit mRNA sequence NA coding protein psRNATarget
JO091744.1
ncRNA:20   CACGAGUGAGAGAAGACAGU   1
  ||||||*|||||||||||||
targets:1   GUGCUCUCUCUCUUCUGUCA   20

1.0 TSA: Elaeis guineensis isotig04490.Elguifruit mRNA sequence NA coding protein psRNATarget
GBSV01026229.1
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:228   UGUGCUCUCUCUCUUCUGUCA   248

1.0 TSA: Elaeis guineensis Unigene8059_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01028385.1
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:349   CGUGCUCUCUCUCUUCUGUCA   369

1.0 TSA: Elaeis guineensis Unigene10218_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01016136.1
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:726   CGUGCUCUCUCUCUUCUGUCA   746

1.0 TSA: Elaeis guineensis CL6026.Contig1_All transcribed RNA sequence NA coding protein psRNATarget
XM_010930530.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:856   UGUGCUCUCUCUCUUCUGUCA   876

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105050485), mRNA NA coding protein psRNATarget
XM_010930141.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:905   UGUGCUCUCUCUCUUCUGUCA   925

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105050210), mRNA NA coding protein psRNATarget
XM_010945250.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1014   UGUGCUCUCUCUCUUCUGUCA   1034

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X4, mRNA NA coding protein psRNATarget
XM_010945248.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1018   UGUGCUCUCUCUCUUCUGUCA   1038

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010945249.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1035   UGUGCUCUCUCUCUUCUGUCA   1055

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X3, mRNA NA coding protein psRNATarget
XM_010945247.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1049   UGUGCUCUCUCUCUUCUGUCA   1069

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010915611.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1088   UGUGCUCUCUCUCUUCUGUCA   1108

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 17 (LOC105039459), mRNA NA coding protein psRNATarget
XM_010921288.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1042   CGUGCUCUCUCUCUUCUGUCA   1062

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 7 (LOC105043657), mRNA NA coding protein psRNATarget
XM_010919254.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1668   UGUGCUCUCUCUCUUCUGUCA   1688

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 18 (LOC105042144), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010930436.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1594   CGUGCUCUCUCUCUUCUGUCA   1614

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 12 (LOC105050427), transcript variant X3, mRNA NA coding protein psRNATarget
XM_010930434.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1600   CGUGCUCUCUCUCUUCUGUCA   1620

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 12 (LOC105050427), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010930433.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1732   CGUGCUCUCUCUCUUCUGUCA   1752

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 12 (LOC105050427), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010919253.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1826   UGUGCUCUCUCUCUUCUGUCA   1846

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 18 (LOC105042144), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010928539.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1857   UGUGCUCUCUCUCUUCUGUCA   1877

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 16 (LOC105049005), mRNA NA coding protein psRNATarget
XM_010929438.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1923   UGUGCUCUCUCUCUUCUGUCA   1943

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 16 (LOC105049697), mRNA NA coding protein psRNATarget
XM_010915503.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1873   CGUGCUCUCUCUCUUCUGUCA   1893

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 12 (LOC105039362), mRNA NA coding protein psRNATarget
XM_010914718.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:2179   UGUGCUCUCUCUCUUCUGUCA   2199

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 16 (LOC105038812), mRNA NA coding protein psRNATarget
XM_010930802.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  **|||||*|||||||||||||
targets:735   CAUGCUCUCUCUCUUCUGUCA   755

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding protein 1 (LOC105050687), transcript variant X1, mRNA NA coding protein psRNATarget
JO098039.1
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  **|||||*|||||||||||||
targets:591   CAUGCUCUCUCUCUUCUGUCA   611

1.0 TSA: Elaeis guineensis isotig10812.Elguifruit mRNA sequence NA coding protein psRNATarget
XM_010945647.2
ncRNA:21   CCACGAGUGAGAGAAGACAGU   1
  **|||||*|||||||||||||
targets:676   CAUGCUCUCUCUCUUCUGUCA   696

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding protein 1-like (LOC105061560), mRNA NA coding protein psRNATarget
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