Search result

BaseInfo

ncRNA ID ath-miR858a
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:26773539-26773725 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 157 - UUUCGUUGUCUGUUCGACCUU - 177
Stem-loop(if miRNA)     ----  -UUU      -         CG    UG     G   UCUCCUCA     ----CU    -C  GCUUUAUCGUUUAUUUCAUUCAUCC
CUCA    UC    GUUUCG UUGUCUGUU  ACCU  GUCUC AUC        AAACC      AAUA  GC                         A
||||    ||    |||||| |||||||||  ||||  ||||| |||        |||||      ||||  ||                         U
GAGU    AG    CAAAGC AGCAGAUAG  UGGG  UAGGG UAG        UUUGG      GGUA  UG                         C
    CUUU  UUUU      U         -A    GU     G   --UUAUUG     CUAUUU    CA  CAAUCAAAUACUACUAGUAUUCUUC
Stem-loop sequence CUCAUCUUUGUUUCGUUGUCUGUUCGACCUUGGUCUCGAUCUCUCCUCAAAACCCUAAUACGCGCUUUAUCGUUUAUUUCAUUCAUCCAUCCUUCUUAUGAUCAUCAUAAACUAACGUACAUGGUUUAUCGGUUUGUUAUUGAUGGGGAUUGGGGUAGAUAGACGAUCGAAACUUUUGAUUUCUGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_100499.2
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  **||*||||||||||||||||
targets:438   CUGGACGAACAGACAACGAAA   458

1.0 Arabidopsis thaliana myb domain protein 13 (MYB13), mRNA myb domain protein 13(MYB13) coding protein psRNATarget
BT025173.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  **||*||||||||||||||||
targets:290   CUGGACGAACAGACAACGAAA   310

1.0 Arabidopsis thaliana At1g06180 mRNA, complete cds NA coding protein psRNATarget
AY519550.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  **||*||||||||||||||||
targets:290   CUGGACGAACAGACAACGAAA   310

1.0 Arabidopsis thaliana MYB transcription factor (At1g06180) mRNA, complete cds NA coding protein psRNATarget
AB493437.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  **||*||||||||||||||||
targets:290   CUGGACGAACAGACAACGAAA   310

1.0 Arabidopsis thaliana At1g06180 mRNA for hypothetical protein, partial cds, clone: RAAt1g06180 NA coding protein psRNATarget
NM_124310.3
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:569   CAGGAAGAACAGACAACGAAA   589

2.0 Arabidopsis thaliana myb domain protein 111 (MYB111), mRNA myb domain protein 111(MYB111) coding protein psRNATarget
NM_130314.4
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:402   CAGGGAGAACAGACAACGAAA   422

2.0 Arabidopsis thaliana myb domain protein 12 (MYB12), mRNA myb domain protein 12(MYB12) coding protein psRNATarget
NM_105294.3
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:491   CAGGAAGAACAGACAACGAAA   511

2.0 Arabidopsis thaliana myb domain protein 20 (MYB20), mRNA myb domain protein 20(MYB20) coding protein psRNATarget
BX819637.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:391   CAGGGAGAACAGACAACGAAA   411

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB9ZG01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX819280.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:382   CAGGGAGAACAGACAACGAAA   402

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB63ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AF371977.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:375   CAGGAAGAACAGACAACGAAA   395

2.0 Arabidopsis thaliana putative transcription factor (At5g49330) mRNA, complete cds NA coding protein psRNATarget
AF062864.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:395   CAGGGAGAACAGACAACGAAA   415

2.0 Arabidopsis thaliana putative transcription factor (MYB12) mRNA, complete cds NA coding protein psRNATarget
NM_117305.5
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:446   CAGGAAGAACAGACAACGAAA   466

2.0 Arabidopsis thaliana myb domain protein 42 (MYB42), mRNA myb domain protein 42(MYB42) coding protein psRNATarget
AY060588.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:354   CAGGGAGAACAGACAACGAAA   374

2.0 Arabidopsis thaliana At2g47460/T30B22.24 mRNA, complete cds NA coding protein psRNATarget
AY142067.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:290   CAGGGAGAACAGACAACGAAA   310

2.0 Arabidopsis thaliana At2g47460/T30B22.24 mRNA, complete cds NA coding protein psRNATarget
AY519580.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:290   CAGGGAGAACAGACAACGAAA   310

2.0 Arabidopsis thaliana MYB transcription factor (At2g47460) mRNA, complete cds NA coding protein psRNATarget
AK221768.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:18   CAGGGAGAACAGACAACGAAA   38

2.0 Arabidopsis thaliana mRNA for putative MYB family transcription factor, complete cds, clone: RAFL21-63-F22 NA coding protein psRNATarget
BX821588.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:62   CAGGGAGAACAGACAACGAAA   82

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL56ZG12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY519634.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:290   CAGGAAGAACAGACAACGAAA   310

2.0 Arabidopsis thaliana MYB transcription factor (At5g49330) mRNA, complete cds NA coding protein psRNATarget
AF062869.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:458   CAGGAAGAACAGACAACGAAA   478

2.0 Arabidopsis thaliana putative transcription factor (MYB20) mRNA, complete cds NA coding protein psRNATarget
AF175999.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:290   CAGGAAGAACAGACAACGAAA   310

2.0 Arabidopsis thaliana putative transcription factor (MYB42) mRNA, complete cds NA coding protein psRNATarget
AY519605.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:290   CAGGAAGAACAGACAACGAAA   310

2.0 Arabidopsis thaliana MYB transcription factor (At4g12350) mRNA, complete cds NA coding protein psRNATarget
BT028904.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:290   CAGGAAGAACAGACAACGAAA   310

2.0 Arabidopsis thaliana unknown protein (At1g66230) mRNA, complete cds NA coding protein psRNATarget
AY519565.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||**|||||||||||||||
targets:290   CAGGAAGAACAGACAACGAAA   310

2.0 Arabidopsis thaliana MYB transcription factor (At1g66230) mRNA, complete cds NA coding protein psRNATarget
NM_111685.3
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *||||*|||||||||||||=|
targets:548   CAGGUAGAACAGACAACGAGA   568

2.5 Arabidopsis thaliana myb domain protein 83 (MYB83), mRNA myb domain protein 83(MYB83) coding protein psRNATarget
AK176048.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *||||*|||||||||||||=|
targets:518   CAGGUAGAACAGACAACGAGA   538

2.5 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-79-A12 NA coding protein psRNATarget
NM_001344109.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||*|||||||||||=||||
targets:433   CAGGCCGAACAGACAAUGAAA   453

2.5 Arabidopsis thaliana Duplicated homeodomain-like superfamily protein (TT2), mRNA Duplicated homeodomain-like superfamily protein(TT2) coding protein psRNATarget
NM_122946.3
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||*|||||||||||=||||
targets:360   CAGGCCGAACAGACAAUGAAA   380

2.5 Arabidopsis thaliana Duplicated homeodomain-like superfamily protein (TT2), mRNA Duplicated homeodomain-like superfamily protein(TT2) coding protein psRNATarget
AF371974.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *||||*|||||||||||||=|
targets:344   CAGGUAGAACAGACAACGAGA   364

2.5 Arabidopsis thaliana putative transcription factor MYB83 (MYB83) mRNA, complete cds NA coding protein psRNATarget
AY550293.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *||||*|||||||||||||=|
targets:344   CAGGUAGAACAGACAACGAGA   364

2.5 Arabidopsis thaliana MYB transcription factor (At3g08500) mRNA, complete cds NA coding protein psRNATarget
BT026506.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *||||*|||||||||||||=|
targets:344   CAGGUAGAACAGACAACGAGA   364

2.5 Arabidopsis thaliana At3g08500 mRNA, complete cds NA coding protein psRNATarget
DQ653071.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *||||*|||||||||||||=|
targets:344   CAGGUAGAACAGACAACGAGA   364

2.5 Arabidopsis thaliana clone 0000019147_0000013188 unknown mRNA NA coding protein psRNATarget
DQ446645.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *||||*|||||||||||||=|
targets:344   CAGGUAGAACAGACAACGAGA   364

2.5 Arabidopsis thaliana clone pENTR221-At3g08500 myb family transcription factor (At3g08500) mRNA, complete cds NA coding protein psRNATarget
AB493606.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *||||*|||||||||||||=|
targets:344   CAGGUAGAACAGACAACGAGA   364

2.5 Arabidopsis thaliana At3g08500 mRNA for hypothetical protein, partial cds, clone: RAAt3g08500 NA coding protein psRNATarget
AF371981.2
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||*|||||||||||=||||
targets:360   CAGGCCGAACAGACAAUGAAA   380

2.5 Arabidopsis thaliana putative transcription factor MYB123 (MYB123) mRNA, complete cds NA coding protein psRNATarget
DQ447000.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||*|||||||||||=||||
targets:296   CAGGCCGAACAGACAAUGAAA   316

2.5 Arabidopsis thaliana clone pENTR221-At5g35550 myb family transcription factor (At5g35550) mRNA, complete cds NA coding protein psRNATarget
AY519630.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||*|||||||||||=||||
targets:296   CAGGCCGAACAGACAAUGAAA   316

2.5 Arabidopsis thaliana MYB transcription factor (At5g35550) mRNA, complete cds NA coding protein psRNATarget
DQ653318.1
ncRNA:21   UUCCAGCUUGUCUGUUGCUUU   1
  *|||*|||||||||||=||||
targets:296   CAGGCCGAACAGACAAUGAAA   316

2.5 Arabidopsis thaliana clone 0000017211_0000012024 unknown mRNA NA coding protein psRNATarget

Reference

1 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).
© 2017 OPP-ncRBASE. All rights reserved.