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BaseInfo

ncRNA ID novel_egu_miR560
Species Elaeis guineensis
Class miRNA
Genome position Chr3:53782744-53782915 [+]
Reference genome EG5
Source SRR3042544
Length 24
Mature sequence(if miRNA) 1 - AGGCUCCUACAAUCAUAUAUGAAG - 24
Stem-loop(if miRNA) --   CU           A        UG      U       AA    AGACUUAAAUUU    GA   AUUAA     A  C  U
  AGG  CCUACAAUCAU UAUGAAGG  CCUUCU GAAGGUU  UUUU            UGUU  UUU     CUCCU UU CG G
  |||  ||||||||||| ||||||||  |||||| |||||||  ||||            ||||  |||     ||||| || ||
  UCU  GGAUGUUAGUA GUACUUCC  GGAAGG CUUCUAA  AAAA            ACAA  GAA     GAGGA GA GC A
CA   AC           C        GU      U       AA    -GAAAACUAGCU    AA   -GAAA     A  A  A
Stem-loop sequence AGGCUCCUACAAUCAUAUAUGAAGGUGCCUUCUUGAAGGUUAAUUUUAGACUUAAAUUUUGUUGAUUUAUUAACUCCUAUUCCGUGAACGAAGAAGGAGAAAGAAGAAAACAUCGAUCAAAAGAAAAAAAAUCUUCUGGAAGGUGCCUUCAUGCAUGAUUGUAGGCAUCUAC