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BaseInfo

ncRNA ID	novel_egu_miR558
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr2:31768454-31768650 [+]
Reference genome	EG5
Source	SRR3042544
Length	24
Mature sequence(if miRNA)	174 - AAGUAGUUUUGAGGUAGUAGAUCA - 197
Stem-loop(if miRNA)	--                       CAC  A                    ACC    G                       UUAGACAGCUUAUAUA   AUCUACUACUUUAAAACUGCUUG   AC AAAAAUUAUAUGAUUUGAAG   UCUA UUUAUACAUCAAGUAGUCAAAAA                A   |||||||||||||||||||||||   || ||||||||||||||||||||   |||| |||||||||||||||||||||||                A   UAGAUGAUGGAGUUUUGAUGAAC   UG UUUUUAAUAUAUUAAAUUUU   AGAU AGAUAUGUAGUUCAUUAGUUUUU                A AC                       AUU  A                    AAA    A                       UUAUAUAAAUUAAAUU
Stem-loop sequence	AUCUACUACUUUAAAACUGCUUGCACACAAAAAAUUAUAUGAUUUGAAGACCUCUAGUUUAUACAUCAAGUAGUCAAAAAUUAGACAGCUUAUAUAAAAUUAAAUUAAAUAUAUUUUUUUGAUUACUUGAUGUAUAGAAUAGAAAAUUUUAAAUUAUAUAAUUUUUAGUUUACAAGUAGUUUUGAGGUAGUAGAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_019847239.1	ncRNA:24   ACUAGAUGAUGGAGUUUUGAUGAA   1   |||||||||=|||||||||||||| targets:3508   UGAUCUACUGCCUCAAAACUACUU   3531 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis regulator of telomere elongation helicase 1 (LOC105031928), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019847213.1	ncRNA:24   ACUAGAUGAUGGAGUUUUGAUGAA   1   |||||||||=|||||||||||||| targets:3981   UGAUCUACUGCCUCAAAACUACUU   4004 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis regulator of telomere elongation helicase 1 (LOC105031928), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019847185.1	ncRNA:24   ACUAGAUGAUGGAGUUUUGAUGAA   1   |||||||||=|||||||||||||| targets:3984   UGAUCUACUGCCUCAAAACUACUU   4007 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis regulator of telomere elongation helicase 1 (LOC105031928), transcript variant X1, mRNA	NA	coding protein	psRNATarget