Search result

BaseInfo

ncRNA ID	novel_egu_miR557
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr11:511233-511350 [+]
Reference genome	EG5
Source	SRR3042544
Length	24
Mature sequence(if miRNA)	95 - AUGUUGGCUAUGUAGGUUUAGGUU - 118
Stem-loop(if miRNA)	--   UU       G   U  UG  -   UUG   UG   --          --U     CACA   CCU  GACCUAC AUG GU  GC UAU   UAG  AGG  CUAUAUAGUU   GACUA    U   |||  ||||||| ||| ||  || |||   |||  |||  ||||||||||   |||||   GGA  UUGGAUG UAU CG  UG AUG   GUC  UUC  GGUAUAUCGA   CUGGU    U UU   -U       -   -  GU  U   --U   GU   UA          UCC     UCUC
Stem-loop sequence	CCUUUGACCUACGAUGUGUUGGCUAUUUGUAGUGAGGCUAUAUAGUUUGACUACACAUUCUCUUGGUCCCUAGCUAUAUGGAUCUUUGCUGUGUAUGUUGGCUAUGUAGGUUUAGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010920389.2	ncRNA:24   UUGGAUUUGGAUGUAUCGGUUGUA   1   *|=|||||||||||||*||||||* targets:32   CAUCUAAACCUACAUACCCAACAC   55 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis translin (LOC105042995), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010920390.2	ncRNA:24   UUGGAUUUGGAUGUAUCGGUUGUA   1   *|=|||||||||||||*||||||* targets:32   CAUCUAAACCUACAUACCCAACAC   55 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis translin (LOC105042995), transcript variant X2, mRNA	NA	coding protein	psRNATarget