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BaseInfo

ncRNA ID novel_egu_miR552
Species Elaeis guineensis
Class miRNA
Genome position Chr2:20765075-20765148 [-]
Reference genome EG5
Source SRR3042544
Length 24
Mature sequence(if miRNA) 51 - ACUGUUGCCAUAAGCUUGAGAUGU - 74
Stem-loop(if miRNA) --  UG        A C UG G              A
  AC  UUGCCAUA G U  A AUGUAGUAGCGGUU A
  ||  |||||||| | |  | ||||||||||||||
  UG  GACGGUAU C G  U UAUAUCGUCGCCAA U
AU  GU        C A GU G              U
Stem-loop sequence ACUGUUGCCAUAAGCUUGAGAUGUAGUAGCGGUUAAUUAACCGCUGCUAUAUGUUGGACCUAUGGCAGUGGUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01030147.1
ncRNA:24   UGU-A-GAGUUCGAAUACCGUUGUCA   1
  |||-|-=|||=|||||||*|||||||
targets:118   ACACUGUUCAGGCUUAUGUCAACAGU   143

2.5 TSA: Elaeis guineensis Unigene11980_All transcribed RNA sequence NA coding protein psRNATarget