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BaseInfo

ncRNA ID novel_egu_miR551
Species Elaeis guineensis
Class miRNA
Genome position Chr2:37015463-37015659 [-]
Reference genome EG5
Source SRR3042544
Length 24
Mature sequence(if miRNA) 1 - AAAGUCAUAAUUUGAUCGCAGGAU - 24
Stem-loop(if miRNA) --        A             U           U     C    UU  UUCA  A    C      A      -            --        U
  UCUGUGAU AAAUUAUGAUUUU UACAUACAAGA GUCAU AUUU  CU    GA GUUA AAAGAG GAAGGA UAUUUUUGUCAU  GAAAAAUU A
  |||||||| ||||||||||||| ||||||||||| ||||| ||||  ||    || |||| |||||| |||||| ||||||||||||  ||||||||
  GGACGCUA UUUAAUACUGAAA AUGUAUGUUUU UAGUA UAAA  GG    CU CAGU UUUCUU CUUCUU GUAAAAACAGUA  UUUUUUAA U
UA        G             U           U     U    CU  UAUC  A    A      C      C            AA        G
Stem-loop sequence UCUGUGAUAAAAUUAUGAUUUUUUACAUACAAGAUGUCAUCAUUUUUCUUUCAGAAGUUACAAAGAGAGAAGGAUAUUUUUGUCAUGAAAAAUUUAUGAAUUUUUUAAAUGACAAAAAUGCUUCUUCCUUCUUUAUGACAUCCUAUGGUCAAAUUAUGAUUUUUUGUAUGUAUAAAGUCAUAAUUUGAUCGCAGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010916187.1
ncRNA:24   UAGGACGCUAGUUUAAUACUGAAA   1
  ||=||*|||||||||||||||||*
targets:688   AUUCUACGAUCAAAUUAUGACUUC   711

2.0 PREDICTED: Elaeis guineensis subtilisin-like protease SBT1.5 (LOC105039875), mRNA NA coding protein psRNATarget