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BaseInfo

ncRNA ID	novel_egu_miR550
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr2:53853092-53853287 [-]
Reference genome	EG5
Source	SRR3042544
Length	24
Mature sequence(if miRNA)	1 - AAGUAGUUUUGAGGUAGUAGAUCA - 24
Stem-loop(if miRNA)	--AUUG    A                  CA                        C  AC        C    A  C     UUGA   GC    AUAA       GCUA CUCAAAACUACUUGUACA  AAAAAUUAUAUGAUUUGAAGAUUC UA  CUAUGCAU AAGU GU AAAAA    ACA  CUAA    A       |||| ||||||||||||||||||  |||||||||||||||||||||||| ||  |||||||| |||| || |||||    |||  ||||    A       UGAU GAGUUUUGAUGAACAUGU  UUUUUAAUAUACUAAACUUUUAAG AU  GAUACGUA UUUA UA UUUUU    UGU  GAUU    U ACUAGA    G                  AA                        U  CA        A    C  U     --UA   -A    AAGU
Stem-loop sequence	AUUGGCUAACUCAAAACUACUUGUACACAAAAAAUUAUAUGAUUUGAAGAUUCCUAACCUAUGCAUCAAGUAGUCAAAAAUUGAACAGCCUAAAUAAAAUUGAAUUAGAUGUAUUUUUUUAUCAUUUAAUGCAUAGACUAUGAAUUUUCAAAUCAUAUAAUUUUUAAUGUACAAGUAGUUUUGAGGUAGUAGAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_019847239.1	ncRNA:24   ACUAGAUGAUGGAGUUUUGAUGAA   1   |||||||||=|||||||||||||| targets:3508   UGAUCUACUGCCUCAAAACUACUU   3531 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis regulator of telomere elongation helicase 1 (LOC105031928), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019847213.1	ncRNA:24   ACUAGAUGAUGGAGUUUUGAUGAA   1   |||||||||=|||||||||||||| targets:3981   UGAUCUACUGCCUCAAAACUACUU   4004 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis regulator of telomere elongation helicase 1 (LOC105031928), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019847185.1	ncRNA:24   ACUAGAUGAUGGAGUUUUGAUGAA   1   |||||||||=|||||||||||||| targets:3984   UGAUCUACUGCCUCAAAACUACUU   4007 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis regulator of telomere elongation helicase 1 (LOC105031928), transcript variant X1, mRNA	NA	coding protein	psRNATarget