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BaseInfo

ncRNA ID novel_egu_miR541
Species Elaeis guineensis
Class miRNA
Genome position Chr1:31658394-31658478 [+]
Reference genome EG5
Source SRR3042544;SRR3042547
Length 21
Mature sequence(if miRNA) 1 - UUUUUAACAAUCUUGUAGGAC - 21
Stem-loop(if miRNA) --       C                         UCUUCC   U
  UUUUUAA AAUCUUGUAGGACUAAUAGCUCCUG      GUG A
  ||||||| |||||||||||||||||||||||||      ||| U
  AAAAAUU UUAGAACAUCCUGAUUAUCGAGGAC      UAC A
AA       A                         ------   U
Stem-loop sequence UUUUUAACAAUCUUGUAGGACUAAUAGCUCCUGUCUUCCGUGUAUAUCAUCAGGAGCUAUUAGUCCUACAAGAUUAUUAAAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019849214.1
ncRNA:21   CAGGAUGUUCUAACAAUUUUU   1
  *||*||||||=||||||||||
targets:43   AUCAUACAAGGUUGUUAAAAA   63

2.5 PREDICTED: Elaeis guineensis protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like (LOC105041557), mRNA NA coding protein psRNATarget