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BaseInfo

ncRNA ID novel_egu_miR539
Species Elaeis guineensis
Class miRNA
Genome position Chr15:8560018-8560227 [-]
Reference genome EG5
Source SRR3042544
Length 24
Mature sequence(if miRNA) 1 - UUUGAGAUAGUAGAUCACAUUCAA - 24
Stem-loop(if miRNA) --    A          C        C U     C  A                      C C        A        -AG C      UAGAUA      AUAA
  GAAU UGAUCUACUA CUUAAAAU G UUGCA AU AAAAAUUAUAUAAUUUGGAAAC C UAGCUUAU CAUCAAGU   C AAAUAU      GUCUGA    A
  |||| |||||||||| |||||||| | ||||| || |||||||||||||||||||||| | |||||||| ||||||||   | ||||||      ||||||    A
  CUUA ACUAGAUGAU GAGUUUUA C AAUGU UG UUUUUAGUGUAUUAAACUUUUG G AUCGGAUA GUAGUUCA   G UUUAUA      UAGAUU    U
AA    C          A        A U     A  G                      A A        C        CUA U      ----UA      AAGU
Stem-loop sequence GAAUAUGAUCUACUACCUUAAAAUCGUUUGCACAUAAAAAAUUAUAUAAUUUGGAAACCCCUAGCUUAUACAUCAAGUAGCCAAAUAUUAGAUAGUCUGAAUAAAAUUGAAUUAGAUAUAUAUUUUGAUCACUUGAUGCAUAGGCUAAGAGUUUUCAAAUUAUGUGAUUUUUGGUAUGUAAUCAAUUUUGAGAUAGUAGAUCACAUUCAA