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BaseInfo

ncRNA ID novel_egu_miR538
Species Elaeis guineensis
Class miRNA
Genome position Chr15:14932132-14932186 [-]
Reference genome EG5
Source SRR3042544
Length 24
Mature sequence(if miRNA) 32 - AUGUUCUCUGGAUACAUAGCACAA - 55
Stem-loop(if miRNA) ---AU   CU UG         -C  AA
     GUU  C  GAUACAUAG  AC  U
     |||  |  |||||||||  ||  U
     CAA  G  UUAUGUGUU  UG  U
CGUGU   AG GU         UA  AU
Stem-loop sequence AUGUUCUCUGGAUACAUAGCACAAUUUUAGUAUUUGUGUAUUUGGGAAACUGUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019850373.1
ncRNA:24   AACACGAUACAUAGGUCUCUUGUA   1
  *|*|*||||||*|||||||||||*
targets:1100   AUCUCCUAUGUCUCCAGAGAACAG   1123

2.5 PREDICTED: Elaeis guineensis inactive receptor-like serine/threonine-protein kinase At2g40270 (LOC105044708), mRNA NA coding protein psRNATarget