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BaseInfo

ncRNA ID	novel_egu_miR531
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr14:16808517-16808711 [+]
Reference genome	EG5
Source	SRR3042544
Length	21
Mature sequence(if miRNA)	1 - AGGGUUUUAGGGUUUAGGGUU - 21
Stem-loop(if miRNA)	--      U    G      G      G      G      GA     G      G                UA                GG UU GG   AGGGUU UAGG UUUAGG UUUAGA UCUAGG UUUAGG  UUAGG UUUAAG UCUAGGGUUUAGGAUU  GAAUUUUAGGUUUUAG  U  C  G   |||||| |||| |||||| |||||| |||||| ||||||  ||||| |||||| ||||||||||||||||  ||||||||||||||||  |  |  U   UUUUAG AUUU GGGUUU GGGUUU GGAUUC AGAUUU  GGUUC GGAUUU GGAUUUCGGAUUUUGG  UUUGGGAUUCGGGAUU  G  G  U GG      U    G      G      G      G      AG     G      G                GA                -- GG AU
Stem-loop sequence	AGGGUUUUAGGGUUUAGGGUUUAGAGUCUAGGGUUUAGGGAUUAGGGUUUAAGGUCUAGGGUUUAGGAUUUAGAAUUUUAGGUUUUAGGGUUUCGGGUUUAGGGGUUAGGGCUUAGGGUUUAGGGUUUUAGGCUUUAGGGUUUAGGGCUUGGGAUUUAGAGCUUAGGGUUUGGGGUUUGGGGUUUAUGAUUUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010941847.2	ncRNA:21   UUGGGA--UUUGGGAUUUUGGGA   1   ||||||--||||||||||||||| targets:49   AACCCUUAAAACCCUAAAACCCU   71 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis polyribonucleotide nucleotidyltransferase 2, mitochondrial (LOC105058802), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01024121.1	ncRNA:21   UUGGGAUUUGGGAUUUUGGGA   1   =|=|||||||||||||*|||| targets:358   GAUCCUAAACCCUAAAUCCCU   378 Target Full Sequence	2.5	TSA: Elaeis guineensis Unigene5950_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010915050.2	ncRNA:21   UUGGGAUUUGGGAUUUUGGGA   1   *|=||||||||||||*||||| targets:82   CAUCCUAAACCCUAACACCCU   102 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis phosphopantothenoylcysteine decarboxylase subunit VHS3 (LOC105039066), mRNA	NA	coding protein	psRNATarget
XM_010921670.2	ncRNA:21   UUGGGAUUUGGGAUUUUGGGA   1   **|=||||||||||||*|||| targets:275   CUCUCUAAACCCUAAACCCCU   295 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis probable plastid-lipid-associated protein 3, chloroplastic (LOC105043943), mRNA	NA	coding protein	psRNATarget
XM_019845874.1	ncRNA:21   UUGGGA-UUUGGGAUUUUGGGA   1   ||||||-||||||||||||||* targets:90   AACCCUUAAACCCUAAAACCCA   111 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis pentatricopeptide repeat-containing protein At5g65560-like (LOC109504742), mRNA	NA	coding protein	psRNATarget
GBSV01047746.1	ncRNA:21   UUGGGA-UUUGGGAUUUUGGGA   1   ||||||-||||||||||||||* targets:89   AACCCUUAAACCCUAAAACCCA   110 Target Full Sequence	3.0	TSA: Elaeis guineensis Unigene29587_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010943425.1	ncRNA:21   UUGGGA-UUUGGGAUUUUGGGA   1   =*||||-||||||||||||||* targets:226   GCCCCUCAAACCCUAAAACCCC   247 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic-like (LOC105059913), mRNA	NA	coding protein	psRNATarget
GBSV01028762.1	ncRNA:21   UUGGGA-UUUGGGAUUUUGGGA   1   =*||||-||||||||||||||* targets:79   GCCCCUCAAACCCUAAAACCCC   100 Target Full Sequence	3.0	TSA: Elaeis guineensis Unigene10595_All transcribed RNA sequence	NA	coding protein	psRNATarget