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BaseInfo

ncRNA ID novel_egu_miR520
Species Elaeis guineensis
Class miRNA
Genome position Chr12:22641592-22641733 [-]
Reference genome EG5
Source SRR3042544
Length 24
Mature sequence(if miRNA) 1 - AGGACUCUCGCUUAUAAGGAGGAA - 24
Stem-loop(if miRNA) --           A  C GA    CG                      C               CAUUAUU
  CCUCCUUAUAA CG G  UCCU  UUGACUUACAAUCGAUGUGGGA UAUUGGUGCCCUCCA       A
  ||||||||||| || |  ||||  |||||||||||||||||||||| |||||||||||||||
  GGAGGAAUAUU GC C  AGGA  AACUGAGUGUUAGCUACACCCU AUAACCACGGGAGGU       C
AA           C  U UC    AU                      A               AUACCAA
Stem-loop sequence CCUCCUUAUAAACGCGGAUCCUCGUUGACUUACAAUCGAUGUGGGACUAUUGGUGCCCUCCACAUUAUUACAACCAUAUGGAGGGCACCAAUAAUCCCACAUCGAUUGUGAGUCAAUAAGGACUCUCGCUUAUAAGGAGGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010939114.2
ncRNA:24   AAGGAGGAAUAUUCGCUCUCAGGA   1
  |**|||||*|*|||||||||||||
targets:24   UGGCUCCUCACAAGCGAGAGUCCU   47

2.0 PREDICTED: Elaeis guineensis 7-deoxyloganetin glucosyltransferase-like (LOC105056801), mRNA NA coding protein psRNATarget