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BaseInfo

ncRNA ID novel_egu_miR519
Species Elaeis guineensis
Class miRNA
Genome position Chr12:24563310-24563458 [-]
Reference genome EG5
Source SRR3042544
Length 24
Mature sequence(if miRNA) 126 - UUUUGAAUGACGAAAAUACUCCUA - 149
Stem-loop(if miRNA) --                 ACUC UA      --                -------------CU      AAAAAGUCAUA
  UUUUGAAUGACGAAAAU    C  UUCUUU  AAAAAAUUAUGAUAUC               ACGUCC           A
  |||||||||||||||||    |  ||||||  ||||||||||||||||               ||||||
  AAAACUUACUGCUUUUA    G  AAGAAA  UUUUUUAAUACUGUAG               UGUAGG           U
UU                 AAAA UC      CU                AAUACAAUAUAAUAC      AUAUCUAUUUU
Stem-loop sequence UUUUGAAUGACGAAAAUACUCCUAUUCUUUAAAAAAUUAUGAUAUCCUACGUCCAAAAAGUCAUAAUUUUUAUCUAUAGGAUGUCAUAAUAUAACAUAAGAUGUCAUAAUUUUUUUCAAAGAACUGAAAAAUUUUCGUCAUUCAAAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019853582.1
ncRNA:24   AUCCUCAUAAAAGCAGUAAGUUUU   1
  *|||=|*||||||||*||||||||
targets:9   GAGGGGCAUUUUCGUAAUUCAAAA   32

2.5 PREDICTED: Elaeis guineensis rop guanine nucleotide exchange factor 14 (LOC105053520), transcript variant X2, mRNA NA coding protein psRNATarget