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BaseInfo

ncRNA ID novel_egu_miR518
Species Elaeis guineensis
Class miRNA
Genome position Chr12:2400338-2400434 [+]
Reference genome EG5
Source SRR3042544
Length 24
Mature sequence(if miRNA) 1 - ACUUGACAAGUACUUGACUGCACC - 24
Stem-loop(if miRNA) --     A      C  G    CACCUAUAAAUCUUCUAUCACUAAAUUAAAAAUUCA  UAAUCCA
  ACUUG CAAGUA UU ACUG                                    GG       A
  ||||| |||||| || ||||                                    ||
  UGAAC GUUCGU GA UGAC                                    AU       U
AC     -      U  G    ------------------------------------  GAAAUCA
Stem-loop sequence ACUUGACAAGUACUUGACUGCACCUAUAAAUCUUCUAUCACUAAAUUAAAAAUUCAGGUAAUCCAAUACUAAAGUACAGUGAGUUGCUUGCAAGUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01018279.1
ncRNA:24   CCAC-GUCA-GUUCAUGAACAGUUCA   1
  |||*-||||-|||||||||||||||*
targets:772   GGUUUCAGUUCAAGUACUUGUCAAGA   797

3.0 TSA: Elaeis guineensis Unigene107_All transcribed RNA sequence NA coding protein psRNATarget