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BaseInfo

ncRNA ID novel_egu_miR509
Species Elaeis guineensis
Class miRNA
Genome position Chr12:16614909-16614972 [+]
Reference genome EG5
Source SRR3042544
Length 24
Mature sequence(if miRNA) 41 - AUGUAUCCAGAGAACAUGAUCGAA - 64
Stem-loop(if miRNA) --    G  -      CA      CA     UA
  CGAU CA GUUCUC  GAUACA  AGCAU  A
  |||| || ||||||  ||||||  |||||  A
  GCUA GU CAAGAG  CUAUGU  UCGUA  G
AA    -  A      AC      -A     UU
Stem-loop sequence CGAUGCAGUUCUCCAGAUACACAAGCAUUAAAGUUAUGCUAUGUAUCCAGAGAACAUGAUCGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JO098537.1
ncRNA:24   AA--GC---UAGUACAAGAGACCUAUGUA   1
  ||--||---|||||*||||||||||||||
targets:511   UUGGCGGCAAUCAUUUUCUCUGGAUACAU   539

1.0 TSA: Elaeis guineensis isotig11310.Elguifruit mRNA sequence NA coding protein psRNATarget
NM_001319911.1
ncRNA:24   AA--GC---UAGUACAAGAGACCUAUGUA   1
  ||--||---|||||*||||||||||||||
targets:622   UUGGCGGCAAUCAUUUUCUCUGGAUACAU   650

1.0 Elaeis guineensis BI1-like protein (LOC105046588), mRNA NA coding protein psRNATarget
JN203307.1
ncRNA:24   AA--GC---UAGUACAAGAGACCUAUGUA   1
  ||--||---|||||*||||||||||||||
targets:622   UUGGCGGCAAUCAUUUUCUCUGGAUACAU   650

1.0 Elaeis guineensis putative transmembrane BAX inhibitor motif-containing protein mRNA, complete cds NA coding protein psRNATarget