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BaseInfo

ncRNA ID novel_egu_miR506
Species Elaeis guineensis
Class miRNA
Genome position Chr10:11988063-11988138 [+]
Reference genome EG5
Source SRR3042544;SRR3042542
Length 24
Mature sequence(if miRNA) 1 - AGAGAGAAUGUAGAGAGAGGAGAG - 24
Stem-loop(if miRNA) A       UGU                   --      A
 GAGAGAA   AGAGAGAGGAGAGAGGAGA  AAGGGA A
 |||||||   |||||||||||||||||||  ||||||
 UUUUUUU   UCUUUUUCUUUUCUUUUCU  UUUUCU A
-       -UU                   AU      C
Stem-loop sequence AGAGAGAAUGUAGAGAGAGGAGAGAGGAGAAAGGGAAAACUCUUUUUAUCUUUUCUUUUCUUUUUCUUUUUUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01012019.1
ncRNA:24   GAGAGGAGAGAGAUGUAAGAGAGA   1
  |||||||||||||||*||||||||
targets:10   CUCUCCUCUCUCUACUUUCUCUCU   33

1.5 TSA: Elaeis guineensis CL4310.Contig2_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01011013.1
ncRNA:24   GAGAGGAGAGAGAUGUAA-GAGAGA   1
  ||-|=|||||||||||||-||||||
targets:7   CU-UUCUCUCUCUACAUUUCUCUCU   30

3.0 TSA: Elaeis guineensis CL3922.Contig2_All transcribed RNA sequence NA coding protein psRNATarget