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BaseInfo

ncRNA ID novel_egu_miR489
Species Elaeis guineensis
Class miRNA
Genome position Chr1:65043568-65043626 [+]
Reference genome EG5
Source SRR3042544
Length 24
Mature sequence(if miRNA) 1 - AGGACAACAACGUUUAUCGAGCAU - 24
Stem-loop(if miRNA) --        -   G U   C A     G U
  AGGACAAC AAC U UAU G GCAUA G C
  |||||||| ||| | ||| | ||||| |
  UCCUGUUG UUG G AUA C CGUGU U G
AC        G   G U   - -     G U
Stem-loop sequence AGGACAACAACGUUUAUCGAGCAUAGGUCGUUGUGUGCCAUAUGGGUUGGUUGUCCUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01010704.1
ncRNA:24   UACGAGCUAUUUGCAACAACAGGA   1
  |||||=||||||||||||||||||
targets:307   AUGCUUGAUAAACGUUGUUGUCCU   330

1.0 TSA: Elaeis guineensis CL3797.Contig2_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01010703.1
ncRNA:24   UACGAGCUAUUUGCAACAACAGGA   1
  ||||||||||||||||||*|||||
targets:374   AUGCUCGAUAAACGUUGUCGUCCU   397

1.5 TSA: Elaeis guineensis CL3797.Contig1_All transcribed RNA sequence NA coding protein psRNATarget