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BaseInfo

ncRNA ID novel_egu_miR487
Species Elaeis guineensis
Class miRNA
Genome position Chr11:15403464-15403561 [+]
Reference genome EG5
Source SRR3042544
Length 24
Mature sequence(if miRNA) 1 - ACGGACAAUACCUCACAUGACGGG - 24
Stem-loop(if miRNA) --A              C              CCC            GG
   CGGACAAUACCUCA AUGACGGGUCGAGC   UGUCCGCAACAC  G
   |||||||||||||| ||||||||||||||   ||||||||||||
   GCUUGUUAUGGAGU UACUGCCCAGUUCG   ACAGGCGUUGUG  C
CUC              A              AAA            AC
Stem-loop sequence ACGGACAAUACCUCACAUGACGGGUCGAGCCCCUGUCCGCAACACGGGCCAGUGUUGCGGACAAAAGCUUGACCCGUCAUAUGAGGUAUUGUUCGCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010937697.2
ncRNA:24   GGGCAGUACACUCCAUAACAGGCA   1
  =||||||*||||||||||||||||
targets:904   UCCGUCACGUGAGGUAUUGUCCGU   927

1.0 PREDICTED: Elaeis guineensis uncharacterized protein At4g13230 (LOC105055739), mRNA NA coding protein psRNATarget
GBSV01020230.1
ncRNA:24   GGGCAGUACACUCCAUAACAGGCA   1
  |=|**||||||||||||||||||*
targets:137   CUCAGCAUGUGAGGUAUUGUCCGC   160

1.0 TSA: Elaeis guineensis Unigene2058_All transcribed RNA sequence NA coding protein psRNATarget
XM_010937697.2
ncRNA:24   GGGCAGUACACUCCAUAACAGGCA   1
  =|||||||*||||||||||*||||
targets:990   UCCGUCAUAUGAGGUAUUGGCCGU   1013

2.5 PREDICTED: Elaeis guineensis uncharacterized protein At4g13230 (LOC105055739), mRNA NA coding protein psRNATarget
XM_010918604.2
ncRNA:24   GGGCAGUACACUCCAUAACAGGCA   1
  =||||||*|||||||||||||=||
targets:1304   UCCGUCACGUGAGGUAUUGUCUGU   1327

2.5 PREDICTED: Elaeis guineensis cyclin-T1-3-like (LOC105041638), mRNA NA coding protein psRNATarget