Search result

BaseInfo

ncRNA ID	novel_egu_miR485
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr11:15403463-15403562 [+]
Reference genome	EG5
Source	SRR3042544
Length	24
Mature sequence(if miRNA)	1 - AACGGACAAUACCUCACAUGACGG - 24
Stem-loop(if miRNA)	--AA              C              CCC            GG     CGGACAAUACCUCA AUGACGGGUCGAGC   UGUCCGCAACAC  G     |||||||||||||| ||||||||||||||   ||||||||||||     GCUUGUUAUGGAGU UACUGCCCAGUUCG   ACAGGCGUUGUG  C UCUC              A              AAA            AC
Stem-loop sequence	AACGGACAAUACCUCACAUGACGGGUCGAGCCCCUGUCCGCAACACGGGCCAGUGUUGCGGACAAAAGCUUGACCCGUCAUAUGAGGUAUUGUUCGCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010937697.2	ncRNA:24   GGCAGUACACUCCAUAACAGGCAA   1   ||||||*||||||||||||||||| targets:905   CCGUCACGUGAGGUAUUGUCCGUU   928 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis uncharacterized protein At4g13230 (LOC105055739), mRNA	NA	coding protein	psRNATarget
XM_010937697.2	ncRNA:24   GGCAGUACACUCCAUAACAGGCAA   1   |||||||*||||||||||*||||| targets:991   CCGUCAUAUGAGGUAUUGGCCGUU   1014 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized protein At4g13230 (LOC105055739), mRNA	NA	coding protein	psRNATarget
XM_010918604.2	ncRNA:24   GGCAGUACACUCCAUAACAGGCAA   1   ||||||*|||||||||||||=||| targets:1305   CCGUCACGUGAGGUAUUGUCUGUU   1328 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis cyclin-T1-3-like (LOC105041638), mRNA	NA	coding protein	psRNATarget
GBSV01020230.1	ncRNA:24   GGCAGUACACUCCAUAACAGGC-AA   1   =|**||||||||||||||||||-|| targets:138   UCAGCAUGUGAGGUAUUGUCCGCUU   162 Target Full Sequence	3.0	TSA: Elaeis guineensis Unigene2058_All transcribed RNA sequence	NA	coding protein	psRNATarget