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BaseInfo

ncRNA ID novel_egu_miR472
Species Elaeis guineensis
Class miRNA
Genome position Chr8:22286553-22286659 [-]
Reference genome EG5
Source SRR3042544
Length 24
Mature sequence(if miRNA) 1 - UGAUAUUUUGUAGGGUUUGAGGAU - 24
Stem-loop(if miRNA) --   UG  -AA   GG   U      ----AA  UGUAGCAGUGUGAGUUAGUCU
  UCU  AG   UAU  GAU UUAUGC      GU                     C
  |||  ||   |||  ||| ||||||      ||
  GGA  UU   AUG  UUA AGUACG      CU                     U
UA   GU  GGG   UU   U      AAGGUG  CUAAUUCGAGAGUUUUGGAGU
Stem-loop sequence UCUUGAGAAUAUGGGAUUUUAUGCAAGUUGUAGCAGUGUGAGUUAGUCUCUUGAGGUUUUGAGAGCUUAAUCUCGUGGAAGCAUGAUAUUUUGUAGGGUUUGAGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010939916.1
ncRNA:24   UAGGAGUUUGGGAUGUUUUAUAGU   1
  |||=||||||=|||||=|||||||
targets:2010   AUCUUCAAACUCUACAGAAUAUCA   2033

2.5 PREDICTED: Elaeis guineensis peptidyl-prolyl cis-trans isomerase CYP57 (LOC105057300), mRNA NA coding protein psRNATarget
GBSV01043545.1
ncRNA:24   UAGGAGUUUGGGAUGUUUUAUAGU   1
  ||||*||||=|||*||||||||||
targets:725   AUCCCCAAAUCCUUCAAAAUAUCA   748

2.5 TSA: Elaeis guineensis Unigene25386_All transcribed RNA sequence NA coding protein psRNATarget