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BaseInfo

ncRNA ID novel_egu_miR471
Species Elaeis guineensis
Class miRNA
Genome position Chr5:24246022-24246117 [+]
Reference genome EG5
Source SRR3042542
Length 21
Mature sequence(if miRNA) 76 - UGGGAGUCCGGGCGGAGCUGC - 96
Stem-loop(if miRNA) --   GGA      -              C    GGAG     -   -  G
  GGU   GCCCGG CUCCCGUGGGAGUU GGGC    CUGUC CUG UA U
  |||   |||||| |||||||||||||| ||||    ||||| ||| || C
  UCG   CGGGCC GAGGGUGCUCUCGA CCCG    GGCGG GAC GU G
CG   AGG      U              -    ---A     C   U  A
Stem-loop sequence GGUGGAGCCCGGCUCCCGUGGGAGUUCGGGCGGAGCUGUCCUGUAGUCGAUGUCAGCGGCGGAGCCCAGCUCUCGUGGGAGUCCGGGCGGAGCUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01024151.1
ncRNA:21   CGUCGAGGCGGGCCUGAGGGU   1
  **=|=||||||||||||||||
targets:5   AGGGUUCCGCCCGGACUCCCA   25

2.0 TSA: Elaeis guineensis Unigene5980_All transcribed RNA sequence NA coding protein psRNATarget
XM_010928743.1
ncRNA:21   CGUC-GAGGCGGGCCUGAGGGU   1
  |*||-||=||||||||||||||
targets:389   GAAGACUUCGCCCGGACUCCCA   410

3.0 PREDICTED: Elaeis guineensis uncharacterized LOC105049174 (LOC105049174), mRNA NA coding protein psRNATarget