A ncRNA database for oil producing plants

Search result

ncRNA ID	novel_egu_miR470
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr7:32534886-32534966 [+]
Reference genome	EG5
Source	SRR3042544;SRR3042542
Length	24
Mature sequence(if miRNA)	58 - AGGAGAAGAAGAAGAGUUCUAGAG - 81
Stem-loop(if miRNA)	--G -GA AA A UU UAGAAUUUUUUUUU UUUUUUU UUUUUUA AU U \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| AUCUUGAGAAGAAG AGGAGAA AGAGAAU UA A GAG AAG AA A UA
Stem-loop sequence	GUAGAAUUUUUUUUUGAUUUUUUUAAUUUUUUAAAUUUUAAUAUAUAAGAGAAAAAGAGGAGAAGAAGAAGAGUUCUAGAG

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

XM_010917300.2

ncRNA:24	GAGA-----UCUUGAGAAGAAGAAGAGGA	1
	\|\|=\|-----\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|*
targets:1715	CUUUUGACAAGAACUCUUCUUUUUCUCCC	1743

2.5

PREDICTED: Elaeis guineensis uncharacterized protein HI_0077 (LOC105040660), transcript variant X1, mRNA

coding protein

GBSV01035776.1

ncRNA:24	GAGA-----UCUUGAGAAGAAGAAGAGGA	1
	\|\|=\|-----\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|*
targets:93	CUUUUGACAAGAACUCUUCUUUUUCUCCC	121

2.5

TSA: Elaeis guineensis Unigene17611_All transcribed RNA sequence

coding protein

XM_010933342.2

ncRNA:24	GAGA-----UCUUGAGAAGAAGAAGAGGA	1
	=\|=\|-----\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|=\|\|
targets:713	UUUUGGAUGAGAAUUCUUCUUCUUCUUCU	741

2.5

PREDICTED: Elaeis guineensis uncharacterized LOC105052511 (LOC105052511), mRNA

coding protein

XM_010926777.2

ncRNA:24	GA-GAUCUUGAGAAGAAGAAGAGGA	1
	\|\|-\|\|**\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|
targets:250	CUGCUUCAACUCUUUUUCUUCUCCU	274

2.5

PREDICTED: Elaeis guineensis piriformospora indica-insensitive protein 2-like (LOC105047722), mRNA

coding protein

XM_010920748.2

ncRNA:24	GAG----AUCUUGAGAAGAAGAAGAGGA	1
	=\|\|----\|=\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|
targets:180	UUCCGCAUGGAUCUCUUCUUCUUCUUCU	207

2.5

PREDICTED: Elaeis guineensis UMP-CMP kinase (LOC105043268), mRNA

coding protein