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BaseInfo

ncRNA ID novel_egu_miR468
Species Elaeis guineensis
Class miRNA
Genome position Chr7:2711935-2712060 [-]
Reference genome EG5
Source SRR3042544;SRR3042545
Length 22
Mature sequence(if miRNA) 1 - CGGGUGGGACGCGGAGGGGGCU - 22
Stem-loop(if miRNA) --           -   -  UA      G    C C   C    GC          G -    CG
  CUCCUUUCGUG CCC CC  CGCCAU GGCU G GCG UGGG  CCAUGCGCUG A CUGG  A
  ||||||||||| ||| ||  |||||| |||| | ||| ||||  |||||||||| | ||||  U
  GGGGGAGGCGC GGG GG  GCGGUG CCGG C CGC ACUC  GGUGCGCGAC U GGCC  G
UC           A   U  --      G    U A   U    UC          G C    UC
Stem-loop sequence CUCCUUUCGUGCCCCCUACGCCAUGGGCUCGCGCGCUGGGGCCCAUGCGCUGGACUGGCGAUGCUCCGGCUGCAGCGCGUGGCUCUCAUCGCACUGGCCGGUGGCGGGUGGGACGCGGAGGGGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01019954.1
ncRNA:22   UCGGGGGAGGCGCAGGGUGGGC   1
  ||||||||||||||||||||||
targets:1564   AGCCCCCUCCGCGUCCCACCCG   1585

0.0 TSA: Elaeis guineensis Unigene1782_All transcribed RNA sequence NA coding protein psRNATarget