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BaseInfo

ncRNA ID	ath-miR858b
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:26772633-26772935 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	275 - UUCGUUGUCUGUUCGACCUUG - 295
Stem-loop(if miRNA)	CCUAC    AG    UU  -A          -A    CAAACAUAG     - GAGUU GGUUUGGUUUUGGGUUUUGGGGGGUUGGUAGUGUUUGAGGUCCAUAUGCCUCGAUCUUCCGCUUCUAUUAAUUAAUUUUCUCUAUUAGAAAUAUUAUCUA      CCGA  GGUU  GG  GAGUAGACAA  GAGA         AGGUG U     U                                                                                                    A      ||||  ||||  ||  ||||||||||  ||||         ||||| |     |      GGUU  UCGG  CC  CUUGUCUGUU  UUCU         CCUUG U     C                                                                                                    U ----C    --    UU  AG          GC    ---AUUCUA     G ----- UAGCCCUGACGAGGAAACUGUUCACAAACGUGACUUAAGUUUUUGAAACUACCCGAAUAUGUAUAGUAAUAUAUACACGUACCAAGCUACCUCACCUUAU
Stem-loop sequence	CCUACCCGAAGGGUUUUGGAGAGUAGACAAAGAGACAAACAUAGAGGUGUGAGUUUGGUUUGGUUUUGGGUUUUGGGGGGUUGGUAGUGUUUGAGGUCCAUAUGCCUCGAUCUUCCGCUUCUAUUAAUUAAUUUUCUCUAUUAGAAAUAUUAUCUAAUUAUUCCACUCCAUCGAACCAUGCACAUAUAUAAUGAUAUGUAUAAGCCCAUCAAAGUUUUUGAAUUCAGUGCAAACACUUGUCAAAGGAGCAGUCCCGAUCUGGUUCCAUCUUAUCUUCGUUGUCUGUUCGACCUUGGCUUUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_111685.3	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*||||*|||||||||||||= targets:547   CCAGGUAGAACAGACAACGAG   567 Target Full Sequence	2.0	Arabidopsis thaliana myb domain protein 83 (MYB83), mRNA	myb domain protein 83(MYB83)	coding protein	psRNATarget
AK176048.1	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*||||*|||||||||||||= targets:517   CCAGGUAGAACAGACAACGAG   537 Target Full Sequence	2.0	Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-79-A12	NA	coding protein	psRNATarget
BT026506.1	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*||||*|||||||||||||= targets:343   CCAGGUAGAACAGACAACGAG   363 Target Full Sequence	2.0	Arabidopsis thaliana At3g08500 mRNA, complete cds	NA	coding protein	psRNATarget
DQ653071.1	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*||||*|||||||||||||= targets:343   CCAGGUAGAACAGACAACGAG   363 Target Full Sequence	2.0	Arabidopsis thaliana clone 0000019147_0000013188 unknown mRNA	NA	coding protein	psRNATarget
AF371974.1	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*||||*|||||||||||||= targets:343   CCAGGUAGAACAGACAACGAG   363 Target Full Sequence	2.0	Arabidopsis thaliana putative transcription factor MYB83 (MYB83) mRNA, complete cds	NA	coding protein	psRNATarget
AY550293.1	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*||||*|||||||||||||= targets:343   CCAGGUAGAACAGACAACGAG   363 Target Full Sequence	2.0	Arabidopsis thaliana MYB transcription factor (At3g08500) mRNA, complete cds	NA	coding protein	psRNATarget
DQ446645.1	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*||||*|||||||||||||= targets:343   CCAGGUAGAACAGACAACGAG   363 Target Full Sequence	2.0	Arabidopsis thaliana clone pENTR221-At3g08500 myb family transcription factor (At3g08500) mRNA, complete cds	NA	coding protein	psRNATarget
AB493606.1	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*||||*|||||||||||||= targets:343   CCAGGUAGAACAGACAACGAG   363 Target Full Sequence	2.0	Arabidopsis thaliana At3g08500 mRNA for hypothetical protein, partial cds, clone: RAAt3g08500	NA	coding protein	psRNATarget
NM_001344109.1	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*|||*|||||||||||=||| targets:432   CCAGGCCGAACAGACAAUGAA   452 Target Full Sequence	2.5	Arabidopsis thaliana Duplicated homeodomain-like superfamily protein (TT2), mRNA	Duplicated homeodomain-like superfamily protein(TT2)	coding protein	psRNATarget
NM_122946.3	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*|||*|||||||||||=||| targets:359   CCAGGCCGAACAGACAAUGAA   379 Target Full Sequence	2.5	Arabidopsis thaliana Duplicated homeodomain-like superfamily protein (TT2), mRNA	Duplicated homeodomain-like superfamily protein(TT2)	coding protein	psRNATarget
AF371981.2	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*|||*|||||||||||=||| targets:359   CCAGGCCGAACAGACAAUGAA   379 Target Full Sequence	2.5	Arabidopsis thaliana putative transcription factor MYB123 (MYB123) mRNA, complete cds	NA	coding protein	psRNATarget
DQ653318.1	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*|||*|||||||||||=||| targets:295   CCAGGCCGAACAGACAAUGAA   315 Target Full Sequence	2.5	Arabidopsis thaliana clone 0000017211_0000012024 unknown mRNA	NA	coding protein	psRNATarget
DQ447000.1	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*|||*|||||||||||=||| targets:295   CCAGGCCGAACAGACAAUGAA   315 Target Full Sequence	2.5	Arabidopsis thaliana clone pENTR221-At5g35550 myb family transcription factor (At5g35550) mRNA, complete cds	NA	coding protein	psRNATarget
AY519630.1	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*|||*|||||||||||=||| targets:295   CCAGGCCGAACAGACAAUGAA   315 Target Full Sequence	2.5	Arabidopsis thaliana MYB transcription factor (At5g35550) mRNA, complete cds	NA	coding protein	psRNATarget
BX832392.1	ncRNA:21   GUUCCAGCUUGUCUGUUGCUU   1   |*=||*||||||||||||||* targets:859   CCGGGACGAACAGACAACGAC   879 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH6ZG04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget

Reference

1	PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012).