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BaseInfo

ncRNA ID novel_egu_miR443
Species Elaeis guineensis
Class miRNA
Genome position Chr11:9213351-9213432 [+]
Reference genome EG5
Source SRR3042542;SRR3042545
Length 24
Mature sequence(if miRNA) 1 - ACUUCAUGUGAGAGAGAAUUGGGU - 24
Stem-loop(if miRNA) --      -       -       GGGUG        UU    GU
  ACUUCA UGUGAGA GAGAAUU     UACAAGGG  GAGG  G
  |||||| ||||||| |||||||     ||||||||  ||||
  UGAAGU AUACUUU CUUUUAA     AUGUUCUC  CUCU  A
UU      G       U       ----A        --    GG
Stem-loop sequence ACUUCAUGUGAGAGAGAAUUGGGUGUACAAGGGUUGAGGGUGAGGUCUCCUCUUGUAAAAUUUUCUUUUCAUAGUGAAGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01017255.1
ncRNA:24   UGGGUUAAGAGAGAGUGUACUUCA   1
  |||||||||||||||||*||||||
targets:839   ACCCAAUUCUCUCUCACCUGAAGU   862

1.5 TSA: Elaeis guineensis CL6532.Contig1_All transcribed RNA sequence NA coding protein psRNATarget