Search result

BaseInfo

ncRNA ID	novel_egu_miR439
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr3:54578475-54578561 [-]
Reference genome	EG5
Source	SRR3042542
Length	24
Mature sequence(if miRNA)	1 - AGAGAGAGUAGAAAGACCUUAGAG - 24
Stem-loop(if miRNA)	----C  A  A          A    AAG   G   UAG    C U      AG UC UUUUAUUUUC UCUC   UUU UCU   GAUU G G      || || |||||||||| ||||   ||| |||   |||| | A      UC AG AAGAUGAGAG AGAG   AGA AGA   UUGA C U GAGAU  C  A          -    -AA   G   -CA    - G
Stem-loop sequence	CAGAUCAUUUUAUUUUCAUCUCAAGUUUGUCUUAGGAUUCGUGAUGCAGUUACAGAGAGAAAGAGAGAGAGUAGAAAGACCUUAGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GBSV01048578.1	ncRNA:24   GAG-------AUUCCAGAAAGAUGAGAGAGA   1   |||-------||||*|||||||*|||||||| targets:152   CUCAAUCAUGUAAGUUCUUUCUCCUCUCUCU   182 Target Full Sequence	2.5	TSA: Elaeis guineensis Unigene30419_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010922939.2	ncRNA:24   GAGAUUCCAGAAAGAUGAGAGAGA   1   ||=*=|||||*||||*|||||||| targets:3486   CUUCGAGGUCAUUCUUCUCUCUCU   3509 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105044878 (LOC105044878), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010922942.2	ncRNA:24   GAGAUUCCAGAAAGAUGAGAGAGA   1   ||=*=|||||*||||*|||||||| targets:3483   CUUCGAGGUCAUUCUUCUCUCUCU   3506 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105044878 (LOC105044878), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010922940.2	ncRNA:24   GAGAUUCCAGAAAGAUGAGAGAGA   1   ||=*=|||||*||||*|||||||| targets:3310   CUUCGAGGUCAUUCUUCUCUCUCU   3333 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105044878 (LOC105044878), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019850837.1	ncRNA:24   GAGAUUCCAGAAAGAUGAGAGAGA   1   ||=*=|||||*||||*|||||||| targets:3225   CUUCGAGGUCAUUCUUCUCUCUCU   3248 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105044878 (LOC105044878), transcript variant X4, mRNA	NA	coding protein	psRNATarget