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BaseInfo

ncRNA ID	novel_egu_miR435
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr3:59596730-59596773 [+]
Reference genome	EG5
Source	SRR3042542
Length	20
Mature sequence(if miRNA)	25 - AGGGUUUAGGGUUUAGGGUA - 44
Stem-loop(if miRNA)	--         UA      AGG   CUUUGGAUU  AGAUUU   G   |||||||||  ||||||   GGGAUUUGG  UUUGGG   A AU         GA      AGU
Stem-loop sequence	CUUUGGAUUUAAGAUUUAGGGAUGAGGGUUUAGGGUUUAGGGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010915958.2	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   *|=||||||||||||||||| targets:217   AAUCCUAAACCCUAAACCCU   236 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis pentatricopeptide repeat-containing protein At1g79490, mitochondrial (LOC105039704), mRNA	NA	coding protein	psRNATarget
GBSV01037283.1	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   *||*|||||||||||||||| targets:121   AACACUAAACCCUAAACCCU   140 Target Full Sequence	1.0	TSA: Elaeis guineensis Unigene19119_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010922512.2	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   *||*||=||||||||||||| targets:393   GACGCUGAACCCUAAACCCU   412 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis DEAD-box ATP-dependent RNA helicase 1 (LOC105044576), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01021929.1	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   *|=||*|||||||||||||| targets:250   AAUCCCAAACCCUAAACCCU   269 Target Full Sequence	2.0	TSA: Elaeis guineensis Unigene3757_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010917149.2	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   **|||*|||||||||||||| targets:223   CCCCCGAAACCCUAAACCCU   242 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis serine/threonine-protein phosphatase 5 (LOC105040568), mRNA	NA	coding protein	psRNATarget
XM_010938891.2	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   *||||*|||||||||||||* targets:46   CACCCAAAACCCUAAACCCC   65 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis 40S ribosomal protein S2-3-like (LOC105056627), mRNA	NA	coding protein	psRNATarget
GBSV01010568.1	ncRNA:20   AUGGGA--UUUGGGAUUUGGGA   1   *|||||--|||||||||||||| targets:109   GACCCUGUAAACCCUAAACCCU   130 Target Full Sequence	2.5	TSA: Elaeis guineensis CL3742.Contig1_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010912641.2	ncRNA:20   AUGGGA--UUUGGGAUUUGGGA   1   *|||||--|||||||||||||| targets:191   GACCCUGUAAACCCUAAACCCU   212 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis box C/D snoRNA protein 1-like (LOC105036919), mRNA	NA	coding protein	psRNATarget
XM_019854561.1	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   *|||=|||||||||||*||| targets:161   GACCUUAAACCCUAAAGCCU   180 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis G patch domain-containing protein TGH homolog (LOC105056309), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_010942294.1	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   **||||||||||*||||||| targets:87   CUCCCUAAACCCAAAACCCU   106 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis peptidyl-prolyl cis-trans isomerase CYP19-3 (LOC105059095), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01026008.1	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   **||||||||||*||||||| targets:4   CUCCCUAAACCCAAAACCCU   23 Target Full Sequence	2.5	TSA: Elaeis guineensis Unigene7838_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010929843.2	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   |*=||||||||||||||||* targets:97   UUUCCUAAACCCUAAACCCC   116 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis ribonuclease Z, chloroplastic (LOC105050004), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01009488.1	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   |*=||||||||||||||||* targets:85   UUUCCUAAACCCUAAACCCC   104 Target Full Sequence	3.0	TSA: Elaeis guineensis CL3323.Contig1_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01009489.1	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   |*=||||||||||||||||* targets:73   UUUCCUAAACCCUAAACCCC   92 Target Full Sequence	3.0	TSA: Elaeis guineensis CL3323.Contig2_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01037058.1	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   |=|||*|||||||||||||* targets:287   UGCCCGAAACCCUAAACCCC   306 Target Full Sequence	3.0	TSA: Elaeis guineensis Unigene18894_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010921670.2	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   **|=|||||||||||||||* targets:275   CUCUCUAAACCCUAAACCCC   294 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis probable plastid-lipid-associated protein 3, chloroplastic (LOC105043943), mRNA	NA	coding protein	psRNATarget
GBSV01013625.1	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   *=||=*|||||||||||||| targets:119   AGCCUAAAACCCUAAACCCU   138 Target Full Sequence	3.0	TSA: Elaeis guineensis CL4960.Contig1_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010930744.2	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   *=||=*|||||||||||||| targets:130   AGCCUAAAACCCUAAACCCU   149 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis uncharacterized LOC105050647 (LOC105050647), mRNA	NA	coding protein	psRNATarget
GBSV01013626.1	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   *=||=*|||||||||||||| targets:113   AGCCUAAAACCCUAAACCCU   132 Target Full Sequence	3.0	TSA: Elaeis guineensis CL4960.Contig2_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_019847434.1	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   |*|||*=||||||||||||| targets:50   UUCCCAGAACCCUAAACCCU   69 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis uncharacterized LOC105035766 (LOC105035766), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010911459.2	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   |*|||*=||||||||||||| targets:53   UUCCCAGAACCCUAAACCCU   72 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis uncharacterized LOC105035766 (LOC105035766), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010911457.2	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   |*|||*=||||||||||||| targets:49   UUCCCAGAACCCUAAACCCU   68 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis uncharacterized LOC105035766 (LOC105035766), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010915019.2	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   *=|||*|||||||||||||* targets:211   CGCCCCAAACCCUAAACCCC   230 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis CCR4-NOT transcription complex subunit 10 (LOC105039046), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01028275.1	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   *=|||*|||||||||||||* targets:189   CGCCCCAAACCCUAAACCCC   208 Target Full Sequence	3.0	TSA: Elaeis guineensis Unigene10108_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01021901.1	ncRNA:20   AUGGGAUUUGGGAUUUGGGA   1   *|=||*|||||||||||||* targets:576   CAUCCAAAACCCUAAACCCA   595 Target Full Sequence	3.0	TSA: Elaeis guineensis Unigene3729_All transcribed RNA sequence	NA	coding protein	psRNATarget