ncRNA ID | novel_egu_miR434 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr3:47179653-47179755 [+] |
Reference genome | EG5 |
Source | SRR3042542 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GUGACUUGCAAGCAACUUACUGUA - 24 |
Stem-loop(if miRNA) |
--G       -    CA    -      A     --UG  AGACUAU      U    UGACUUG CAAG  ACUU ACUGUA UUUGA    CU       UUGAGU U    ||||||| ||||  |||| |||||| |||||    ||       |||||| C    AUUGAAC GUUU  UGAA UGACGU GGAUU    GA       GACUUA U GUG       U    -A    C      -     UUUA  AAACAAU      A |
Stem-loop sequence | GUGACUUGCAAGCAACUUACUGUAAUUUGAUGCUAGACUAUUUGAGUUUCUAAUUCAGUAACAAAAGAUUUUUAGGUGCAGUCAAGUAUUUGUCAAGUUAGUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GBSV01010704.1 |
|
1.0 | TSA: Elaeis guineensis CL3797.Contig2_All transcribed RNA sequence | NA | coding protein | psRNATarget | |||||||||
GBSV01010703.1 |
|
1.0 | TSA: Elaeis guineensis CL3797.Contig1_All transcribed RNA sequence | NA | coding protein | psRNATarget |