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BaseInfo

ncRNA ID novel_egu_miR434
Species Elaeis guineensis
Class miRNA
Genome position Chr3:47179653-47179755 [+]
Reference genome EG5
Source SRR3042542
Length 24
Mature sequence(if miRNA) 1 - GUGACUUGCAAGCAACUUACUGUA - 24
Stem-loop(if miRNA) --G       -    CA    -      A     --UG  AGACUAU      U
   UGACUUG CAAG  ACUU ACUGUA UUUGA    CU       UUGAGU U
   ||||||| ||||  |||| |||||| |||||    ||       |||||| C
   AUUGAAC GUUU  UGAA UGACGU GGAUU    GA       GACUUA U
GUG       U    -A    C      -     UUUA  AAACAAU      A
Stem-loop sequence GUGACUUGCAAGCAACUUACUGUAAUUUGAUGCUAGACUAUUUGAGUUUCUAAUUCAGUAACAAAAGAUUUUUAGGUGCAGUCAAGUAUUUGUCAAGUUAGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01010704.1
ncRNA:24   AUGUCAUUCAACGAACGUUCAGUG   1
  |=||||=|||||||||||||||||
targets:94   UGCAGUGAGUUGCUUGCAAGUCAC   117

1.0 TSA: Elaeis guineensis CL3797.Contig2_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01010703.1
ncRNA:24   AUGUCAUUCAACGAACGUUCAGUG   1
  |=||||=|||||||||||||||||
targets:161   UGCAGUGAGUUGCUUGCAAGUCAC   184

1.0 TSA: Elaeis guineensis CL3797.Contig1_All transcribed RNA sequence NA coding protein psRNATarget