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BaseInfo

ncRNA ID novel_egu_miR430
Species Elaeis guineensis
Class miRNA
Genome position Chr2:19814072-19814149 [+]
Reference genome EG5
Source SRR3042542
Length 24
Mature sequence(if miRNA) 55 - AGGAUCUGAAAGAAGUUAGAGGGC - 78
Stem-loop(if miRNA) --         GGG   U        GUUC   -   U A
  CUUCUAAUU   UUC AGAUUCUG    GAA UGC C C
  |||||||||   ||| ||||||||    ||| ||| |
  GGAGAUUGA   AAG UCUAGGAC    CUU ACG G U
CG         AGA   -        AUAU   C   U U
Stem-loop sequence CUUCUAAUUGGGUUCUAGAUUCUGGUUCGAAUGCUCACUUGUGCACUUCUAUACAGGAUCUGAAAGAAGUUAGAGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019852392.1
ncRNA:24   CGGGAGAUUGAAGAAAGUCUAGGA   1
  *==*|||=|||||*||||||||||
targets:4181   AUUAUCUGACUUCAUUCAGAUCCU   4204

2.5 PREDICTED: Elaeis guineensis protein SMG7-like (LOC105049426), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010929061.2
ncRNA:24   CGGGAGAUUGAAGAAAGUCUAGGA   1
  *==*|||=|||||*||||||||||
targets:4147   AUUAUCUGACUUCAUUCAGAUCCU   4170

2.5 PREDICTED: Elaeis guineensis protein SMG7-like (LOC105049426), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019852393.1
ncRNA:24   CGGGAGAUUGAAGAAAGUCUAGGA   1
  *==*|||=|||||*||||||||||
targets:3709   AUUAUCUGACUUCAUUCAGAUCCU   3732

2.5 PREDICTED: Elaeis guineensis protein SMG7-like (LOC105049426), transcript variant X3, mRNA NA coding protein psRNATarget