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BaseInfo

ncRNA ID novel_egu_miR420
Species Elaeis guineensis
Class miRNA
Genome position Chr2:62581116-62581205 [+]
Reference genome EG5
Source SRR3042542
Length 21
Mature sequence(if miRNA) 70 - UGGGAGUCCGGGCGGAGCUGC - 90
Stem-loop(if miRNA) -A   GGA      -      UA    U      GGAG  GUG   AU
  GGU   GCCCGG CUCCCG  GGAG CCGGGC    CU   CCG  G
  |||   |||||| ||||||  |||| ||||||    ||   |||
  UCG   CGGGCC GAGGGU  CCUC GGCCCG    GG   GGC  U
CG   AGG      U      GC    -      ---A  --A   GU
Stem-loop sequence AGGUGGAGCCCGGCUCCCGUAGGAGUCCGGGCGGAGCUGUGCCGAUGUUGCGGAGGAGCCCGGCUCCCGUGGGAGUCCGGGCGGAGCUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01024151.1
ncRNA:21   CGUCGAGGCGGGCCUGAGGGU   1
  **=|=||||||||||||||||
targets:5   AGGGUUCCGCCCGGACUCCCA   25

2.0 TSA: Elaeis guineensis Unigene5980_All transcribed RNA sequence NA coding protein psRNATarget
XM_010928743.1
ncRNA:21   CGUC-GAGGCGGGCCUGAGGGU   1
  |*||-||=||||||||||||||
targets:389   GAAGACUUCGCCCGGACUCCCA   410

3.0 PREDICTED: Elaeis guineensis uncharacterized LOC105049174 (LOC105049174), mRNA NA coding protein psRNATarget