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BaseInfo

ncRNA ID	novel_egu_miR406
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr11:5163063-5163137 [-]
Reference genome	EG5
Source	SRR3042542
Length	21
Mature sequence(if miRNA)	1 - AGAAUCUUGAUGAUGCUGCAU - 21
Stem-loop(if miRNA)	-- UG               A     ---   --UG   A   G  GCAUCAUCAAGAUUC CAUUG   GUC    AGC G   |  ||||||||||||||| |||||   |||    |||   C  CGUAGUAGUUCUAAG GUAAU   UAG    UCG C UA GU               A     UCU   UGUA   U
Stem-loop sequence	GUGGCAUCAUCAAGAUUCACAUUGGUCUGAGCAGCUGCUAUGUGAUUCUUAAUGAGAAUCUUGAUGAUGCUGCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GBSV01034936.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:545   CUGCAGCAUCAUCAGGAUUCU   565 Target Full Sequence	1.5	TSA: Elaeis guineensis Unigene16769_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010931581.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1349   CUGCAGCAUCAUCAGGAUUCU   1369 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105051240), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019852625.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1891   CUGCAGCAUCAUCAGGAUUCU   1911 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105051240), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010909212.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1731   CUGCAGCAUCAUCAGGAUUCU   1751 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis AP2-like ethylene-responsive transcription factor TOE3 (LOC105034164), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010931580.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1987   CUGCAGCAUCAUCAGGAUUCU   2007 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105051240), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010909211.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1776   CUGCAGCAUCAUCAGGAUUCU   1796 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis AP2-like ethylene-responsive transcription factor TOE3 (LOC105034164), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010922647.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1879   CUGCAGCAUCAUCAGGAUUCU   1899 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis ethylene-responsive transcription factor RAP2-7 (LOC105044670), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010924194.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1997   CUGCAGCAUCAUCAGGAUUCU   2017 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105045791), mRNA	NA	coding protein	psRNATarget
XM_010922646.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1925   CUGCAGCAUCAUCAGGAUUCU   1945 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis ethylene-responsive transcription factor RAP2-7 (LOC105044670), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010933735.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:2204   CUGCAGCAUCAUCAGGAUUCU   2224 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105052807), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010933734.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:2209   CUGCAGCAUCAUCAGGAUUCU   2229 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105052807), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010933733.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:2222   CUGCAGCAUCAUCAGGAUUCU   2242 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105052807), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010933732.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:2228   CUGCAGCAUCAUCAGGAUUCU   2248 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105052807), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01036225.1	ncRNA:19   CGUCGUAGUAGUUCUAAGA   1   ||||||||||||=|||||| targets:1   GCAGCAUCAUCAGGAUUCU   19 Target Full Sequence	1.5	TSA: Elaeis guineensis Unigene18060_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010924516.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |***||||||||||||||||| targets:315   AAAAAGCAUCAUCAAGAUUCU   335 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis unknown protein 1-like (LOC105046032), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010924515.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |***||||||||||||||||| targets:325   AAAAAGCAUCAUCAAGAUUCU   345 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis unknown protein 1-like (LOC105046032), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JO087572.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1425   AUGCAGCAUCAUCAGGAUUCC   1445 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00324.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087571.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1426   AUGCAGCAUCAUCAGGAUUCC   1446 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00323.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087565.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1447   AUGCAGCAUCAUCAGGAUUCC   1467 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00317.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087568.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1448   AUGCAGCAUCAUCAGGAUUCC   1468 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00320.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
XM_010930045.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1548   AUGCAGCAUCAUCAGGAUUCC   1568 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2 (LOC105050146), mRNA	NA	coding protein	psRNATarget
JO087570.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1425   AUGCAGCAUCAUCAGGAUUCC   1445 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00322.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087567.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1426   AUGCAGCAUCAUCAGGAUUCC   1446 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00319.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087566.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1447   AUGCAGCAUCAUCAGGAUUCC   1467 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00318.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087569.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1448   AUGCAGCAUCAUCAGGAUUCC   1468 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00321.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087578.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   =|||||||||||||=|||||* targets:389   GUGCAGCAUCAUCAGGAUUCC   409 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00330.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087577.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   =|||||||||||||=|||||* targets:389   GUGCAGCAUCAUCAGGAUUCC   409 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00329.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
XM_019846664.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   =|||||||||||||=|||||* targets:1382   GUGCAGCAUCAUCAGGAUUCC   1402 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105033440), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019846663.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   =|||||||||||||=|||||* targets:1616   GUGCAGCAUCAUCAGGAUUCC   1636 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105033440), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019854797.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||==|||||||||||||||* targets:376   CUGUGGCAUCAUCAAGAUUCA   396 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis uncharacterized LOC109506608 (LOC109506608), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01015198.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   =*|==|||||||||||||||* targets:14   GCGUGGCAUCAUCAAGAUUCA   34 Target Full Sequence	3.0	TSA: Elaeis guineensis CL5623.Contig1_All transcribed RNA sequence	NA	coding protein	psRNATarget
JO099524.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ***=|||=||||||||||||| targets:1219   CAAUAGCGUCAUCAAGAUUCU   1239 Target Full Sequence	3.0	TSA: Elaeis guineensis isotig12297.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
XM_019847730.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:1383   CUGUAUCUUCAUCAAGAUUCU   1403 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis cysteine-rich receptor-like protein kinase 10 (LOC105037021), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_019847729.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:1383   CUGUAUCUUCAUCAAGAUUCU   1403 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis cysteine-rich receptor-like protein kinase 10 (LOC105037021), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019847728.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:1377   CUGUAUCUUCAUCAAGAUUCU   1397 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis cysteine-rich receptor-like protein kinase 10 (LOC105037021), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010912726.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:1383   CUGUAUCUUCAUCAAGAUUCU   1403 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis cysteine-rich receptor-like protein kinase 10 (LOC105037021), transcript variant X1, mRNA	NA	coding protein	psRNATarget