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BaseInfo

ncRNA ID	novel_egu_miR401
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr14:4109742-4109840 [+]
Reference genome	EG5
Source	SRR3042542;SRR3042544
Length	21
Mature sequence(if miRNA)	1 - AAGGUGGAGAAGCAGGGCACG - 21
Stem-loop(if miRNA)	--AA          C          CAUU    U   UCACAUA     A     GGUGGAGAAG AGGGCACGUG    AUUA CUA       CUCUU U     |||||||||| ||||||||||    |||| |||       |||||     CCACCUCUUC UCCCGUGUAC    UGAU GGU       GAGAA A CGAA          U          UUCU    C   -UGAGAA     C
Stem-loop sequence	AAGGUGGAGAAGCAGGGCACGUGCAUUAUUAUCUAUCACAUACUCUUAUACAAGAGAAGAGUUGGCUAGUUCUUCAUGUGCCCUUCUUCUCCACCAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010927670.2	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   |||||||||||||||||||*| targets:1504   CGUGCCCUGCUUCUCCACCGU   1524 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis protein CUP-SHAPED COTYLEDON 2-like (LOC105048369), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019851596.1	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   |||||||||||||||||||*| targets:1212   CGUGCCCUGCUUCUCCACCGU   1232 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis protein CUP-SHAPED COTYLEDON 2-like (LOC105048369), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019851595.1	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   |||||||||||||||||||*| targets:1206   CGUGCCCUGCUUCUCCACCGU   1226 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis protein CUP-SHAPED COTYLEDON 2-like (LOC105048369), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010917701.2	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   |||||||||||||||||||*| targets:1067   CGUGCCCUGCUUCUCCACCGU   1087 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis protein CUP-SHAPED COTYLEDON 2 (LOC105040939), mRNA	NA	coding protein	psRNATarget
XM_019850188.1	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   *||||||||||||||||*||| targets:729   GGUGCCCUGCUUCUCCAGCUU   749 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis NAC domain-containing protein 21/22-like (LOC105033559), mRNA	NA	coding protein	psRNATarget
XM_010906348.2	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   *||||||||||||||||*||| targets:647   GGUGCCCUGCUUCUCCAGCUU   667 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis NAC domain-containing protein 21/22 (LOC105032026), mRNA	NA	coding protein	psRNATarget
GBSV01017677.1	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   *||||||||||||||||*||| targets:57   GGUGCCCUGCUUCUCCAGCUU   77 Target Full Sequence	1.5	TSA: Elaeis guineensis CL6729.Contig1_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01017678.1	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   *||||||||||||||||*||| targets:44   GGUGCCCUGCUUCUCCAGCUU   64 Target Full Sequence	1.5	TSA: Elaeis guineensis CL6729.Contig2_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010921368.2	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   |*|||=||*|||||||||||| targets:37   CCUGCUCUUCUUCUCCACCUU   57 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105043709 (LOC105043709), mRNA	NA	coding protein	psRNATarget
GBSV01007720.1	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   |*|||=||*|||||||||||| targets:48   CCUGCUCUUCUUCUCCACCUU   68 Target Full Sequence	2.5	TSA: Elaeis guineensis CL2654.Contig2_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010907761.2	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   **|||=|||||||||||||*| targets:138   GCUGCUCUGCUUCUCCACCCU   158 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105033109 (LOC105033109), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010907762.2	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   **|||=|||||||||||||*| targets:138   GCUGCUCUGCUUCUCCACCCU   158 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105033109 (LOC105033109), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019846538.1	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   **|||=|||||||||||||*| targets:138   GCUGCUCUGCUUCUCCACCCU   158 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105033109 (LOC105033109), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010936957.2	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   =|*|||=|||||||||||||* targets:658   UGGGCCUUGCUUCUCCACCUA   678 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis AUGMIN subunit 4 (LOC105055203), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010936958.2	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   =|*|||=|||||||||||||* targets:656   UGGGCCUUGCUUCUCCACCUA   676 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis AUGMIN subunit 4 (LOC105055203), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JO094151.1	ncRNA:21   GCACGGGACGAAGAGGUGGAA   1   =|*||=|*||||||||||||| targets:269   UGAGCUCAGCUUCUCCACCUU   289 Target Full Sequence	3.0	TSA: Elaeis guineensis isotig06894.Elguifruit mRNA sequence	NA	coding protein	psRNATarget