ncRNA ID | novel_egu_miR394 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr1:21268938-21269047 [+] |
Reference genome | EG5 |
Source | SRR3042542;SRR3042544;SRR3042545;SRR3042547;SRR3042547;SRR3042548 |
Length | 22 |
Mature sequence(if miRNA) | 1 - GGAGUGGGGUUGGUGUGGAAUA - 22 |
Stem-loop(if miRNA) |
--         UU     -    U  -  UU  UC   U         -C     AUC   GGAGUGGGG  GGUGU GGAA AU CC  UC  CUC GAGUUUCUU  UCUAU   A   |||||||||  ||||| |||| || ||  ||  ||| |||||||||  |||||   CCUUACCCU  CCAUA CCUU UA GG  GG  GGG CUCGAAGAA  AGAUA   U AA         --     A    U  U  -U  UU   U         AA     CUA |
Stem-loop sequence | GGAGUGGGGUUGGUGUGGAAUAUCCUUUCUCCUCUGAGUUUCUUCUCUAUAUCAUAUCAUAGAAAAAGAAGCUCUGGGUUGGUGGUAUUUUCCAAUACCUCCCAUUCCAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
JO094301.1 |
|
1.5 | TSA: Elaeis guineensis isotig07044.Elguifruit mRNA sequence | NA | coding protein | psRNATarget |