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BaseInfo

ncRNA ID novel_egu_miR394
Species Elaeis guineensis
Class miRNA
Genome position Chr1:21268938-21269047 [+]
Reference genome EG5
Source SRR3042542;SRR3042544;SRR3042545;SRR3042547;SRR3042547;SRR3042548
Length 22
Mature sequence(if miRNA) 1 - GGAGUGGGGUUGGUGUGGAAUA - 22
Stem-loop(if miRNA) --         UU     -    U  -  UU  UC   U         -C     AUC
  GGAGUGGGG  GGUGU GGAA AU CC  UC  CUC GAGUUUCUU  UCUAU   A
  |||||||||  ||||| |||| || ||  ||  ||| |||||||||  |||||
  CCUUACCCU  CCAUA CCUU UA GG  GG  GGG CUCGAAGAA  AGAUA   U
AA         --     A    U  U  -U  UU   U         AA     CUA
Stem-loop sequence GGAGUGGGGUUGGUGUGGAAUAUCCUUUCUCCUCUGAGUUUCUUCUCUAUAUCAUAUCAUAGAAAAAGAAGCUCUGGGUUGGUGGUAUUUUCCAAUACCUCCCAUUCCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JO094301.1
ncRNA:22   AUAAGGUGUGGUUGGGGUGAGG   1
  |||||||||||||||||=||||
targets:445   UAUUCCACACCAACCCCGCUCC   466

1.5 TSA: Elaeis guineensis isotig07044.Elguifruit mRNA sequence NA coding protein psRNATarget