Search result

BaseInfo

ncRNA ID novel_egu_miR393
Species Elaeis guineensis
Class miRNA
Genome position Chr1:21139570-21139668 [+]
Reference genome EG5
Source SRR3042542
Length 24
Mature sequence(if miRNA) 1 - AGAAACUGGAGAGAGAAGGUAGAG - 24
Stem-loop(if miRNA) AGAAACU       --         -------------------------               
       GGAGAGA  GAAGGUAGA                         GAGAGGAGAGAAAGAA
       |||||||  |||||||||                         |||||||||||||||A
       UCUCUUU  UUUUUAUUU                         UUCUUCUCUCUUUUUA
-------       UA         UUAUUUUUAUUUUAUUUUAUUUUUC               
Stem-loop sequence AGAAACUGGAGAGAGAAGGUAGAGAGAGGAGAGAAAGAAAAUUUUUCUCUCUUCUUCUUUUUAUUUUAUUUUAUUUUUAUUUUUAUUUUUAUUUUCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019854012.1
ncRNA:24   GAGAUGGAAGAGAGAGGUCAAAGA   1
  *||**|||||||||||=||||||*
targets:2251   GUCAUCCUUCUCUCUCUAGUUUCC   2274

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105055185 (LOC105055185), mRNA NA coding protein psRNATarget