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BaseInfo

ncRNA ID	ath-miRf10888-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - GCUCGACCAGGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)	UG                     UCU   G   C  CUCGACCAGGGGGUCGAGUGG   CUU AGA |  |||||||||||||||||||||   ||| ||U G  GAGCUGGUUCUCCAGCUCAUC   GAA UUC  GU                     CUC   G
Stem-loop sequence	CUGCUCGACCAGGGGGUCGAGUGGUCUCUUGAGAUCUUGAAGCUCCUACUCGACCUCUUGGUCGAGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   ||||||||||||||||||||||= targets:89   ACCACUCGACCCCCUGGUCGAGU   111 Target Full Sequence	1.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   ||||||||||||||||||||||= targets:123   ACCACUCGACCCCCUGGUCGAGU   145 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   ||||||||||||||||||||||= targets:498   ACCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   ||||||||||||||||||||||= targets:498   ACCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   =|||||||||||||||||||||= targets:229   GCCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   *|=|||||||||||||||||||= targets:180   UCUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   =|||||||||||||||||||||= targets:229   GCCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   *|=|||||||||||||||||||= targets:180   UCUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   |=||||||||||||||||||||= targets:1570   AUCACUCGACCCCCUGGUCGAGU   1592 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:23   UGG--UGAGCUGGGGGACCAGCUCG   1   |||--|||||||||||||||||||= targets:305   ACCUUACUCGACCCCCUGGUCGAGU   329 Target Full Sequence	1.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   ===||||*||||||||||||||= targets:300   GUUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   ===||||*||||||||||||||= targets:300   GUUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   |==||*||||||||||||||||= targets:582   AUUACYCGACCCCCUGGUCGAGU   604 Target Full Sequence	2.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT025674.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   *|=|||||||||||*|||||||= targets:186   UCUACUCGACCCCCAGGUCGAGU   208 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   |||||||||||||*||||||||= targets:488   ACCACUCGACCCCGUGGUCGAGU   510 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   |||||||||||||*||||||||= targets:534   ACCACUCGACCCCAUGGUCGAGU   556 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   ||||||||||||||*|||||||= targets:1103   ACCACUCGACCCCCAGGUCGAGU   1125 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:23   UGGUGAGCUGGGGGACCAGCUCG   1   |||||||||||||*||||||||= targets:1208   ACCACUCGACCCCGUGGUCGAGU   1230 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget