Search result

BaseInfo

ncRNA ID	novel_egu_miR388
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr4:3171063-3171112 [-]
Reference genome	EG5
Source	SRR3042542
Length	24
Mature sequence(if miRNA)	27 - AAUCAAAGAUCUAAGACAUUAAUU - 50
Stem-loop(if miRNA)	--      -A      A  C    AU   AAUCAA  GAUCUA GA AUUA  U   ||||||  |||||| || ||||   UUGGUU  UUGGGU UU UAAU  U GA      AA      A  -    AC
Stem-loop sequence	AAUCAAAGAUCUAAGACAUUAAUUUCAUAAUUUAUGGGUUAAUUGGUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GBSV01037559.1	ncRNA:24   UUAAUUACAGAAUCUAGAAACUAA   1   =||||||*|||||||||||||||* targets:22   GAUUAAUUUCUUAGAUCUUUGAUA   45 Target Full Sequence	2.0	TSA: Elaeis guineensis Unigene19395_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010907002.2	ncRNA:24   UUAAUUACAGAAUCUAGAAACUAA   1   =||||||*|||||||||||||||* targets:1079   GAUUAAUUUCUUAGAUCUUUGAUA   1102 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis acetylornithine aminotransferase, mitochondrial-like (LOC105032541), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010907001.2	ncRNA:24   UUAAUUACAGAAUCUAGAAACUAA   1   =||||||*|||||||||||||||* targets:1079   GAUUAAUUUCUUAGAUCUUUGAUA   1102 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis acetylornithine aminotransferase, mitochondrial-like (LOC105032541), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010910677.2	ncRNA:24   UUA-AUUACAGAAUCUAGAAACUAA   1   *||-|*||||=||=||||||||||| targets:1844   CAUGUCAUGUUUUGGAUCUUUGAUU   1868 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis F-box protein SKIP22 (LOC105035216), mRNA	NA	coding protein	psRNATarget