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BaseInfo

ncRNA ID ath-miRf10887-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - UGGUGAUGUCCUCUGCUCGACC - NA
Stem-loop(if miRNA)     -U  AG    G   U -CU UG                     UCU   G  
GAAG  GA  UGGU AUG C   C  CUCGACCAGGGGGUCGAGUGG   CUU AGA
||||  ||  |||| ||| |   |  |||||||||||||||||||||   ||| ||U
CUUC  CU  ACUA UAC G   G  GAGCUGGUUCUCCAGCUCAUC   GAA UUC
    UC  GG    G   U UUU GU                     CUC   G  
Stem-loop sequence GAAGUGAAGUGGUGAUGUCCUCUGCUCGACCAGGGGGUCGAGUGGUCUCUUGAGAUCUUGAAGCUCCUACUCGACCUCUUGGUCGAGUGGUUUGUCAUGAUCAGGUCCUCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183042.1
ncRNA:22   CCAGCUCGUCUCCUGUAGUGGU   1
  |||||||=||||||||||||=|
targets:1585   GGUCGAGUAGAGGACAUCACUA   1606

2.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
EF183194.1
ncRNA:22   CCAGCUCGUCUCCUGUAGUGGU   1
  |||||||=|||*||||||||||
targets:463   GGUCGAGUAGAAGACAUCACCA   484

2.5 Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence NA coding protein psRNATarget
AY227642.1
ncRNA:22   CCAGCUCGUCUCCUGUAGUGGU   1
  |||||||=||||*|||||||||
targets:822   GGUCGAGUAGAGCACAUCACCA   843

2.5 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget