Search result

BaseInfo

ncRNA ID	novel_egu_miR381
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr10:3321063-3321272 [+]
Reference genome	EG5
Source	SRR3042542
Length	24
Mature sequence(if miRNA)	187 - UUUGAGGUAGUAGAUCAUAUCCAA - 210
Stem-loop(if miRNA)	-- A             A       C  CUU     CA        A  A    A   -   UC  A  C  A            A    UUAG   GA    AUAA   G AUGUGAUCUACUA CUCGAAA UA   GUAUA  AAAAAUUA AU AUUU GAA AUC  UA UC AU UAUCAAGUAGUC AAAA    ACA  UUAA    A   | ||||||||||||| ||||||| ||   |||||  |||||||| || |||| ||| |||  || || || |||||||||||| ||||    |||  ||||    A   C UAUACUAGAUGAU GAGUUUU AU   CGUGU  UUUUUAGU UA UAAA CUU UAG  AU AG UA GUAGUUCAUUAG UUUU    UGU  GAUU    U AA C             G       A  AAC     AG        A  C    -   C   GA  C  A  C            C    --UA   -A    AAAU
Stem-loop sequence	GAAUGUGAUCUACUAACUCGAAACUACUUGUAUACAAAAAAUUAAAUAAUUUAGAAAUCUCUAAUCCAUAUAUCAAGUAGUCAAAAAUUAGACAGAUUAAAUAAAAUUAAAUUAGAUGUAUUUUUCGAUUACUUGAUGCAUAGACUAAGGAUCUUCAAAUCAUAUGAUUUUUGAUGUGCCAAUAAUUUUGAGGUAGUAGAUCAUAUCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_019847239.1	ncRNA:24   AACCUAUACUAGAUGAUGGAGUUU   1   ||**||=|||||||||=||||||| targets:3501   UUAAAUGUGAUCUACUGCCUCAAA   3524 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis regulator of telomere elongation helicase 1 (LOC105031928), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019847213.1	ncRNA:24   AACCUAUACUAGAUGAUGGAGUUU   1   ||**||=|||||||||=||||||| targets:3974   UUAAAUGUGAUCUACUGCCUCAAA   3997 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis regulator of telomere elongation helicase 1 (LOC105031928), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019847185.1	ncRNA:24   AACCUAUACUAGAUGAUGGAGUUU   1   ||**||=|||||||||=||||||| targets:3977   UUAAAUGUGAUCUACUGCCUCAAA   4000 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis regulator of telomere elongation helicase 1 (LOC105031928), transcript variant X1, mRNA	NA	coding protein	psRNATarget