ncRNA ID | novel_egu_miR372 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr2:3019704-3019866 [-] |
Reference genome | EG5 |
Source | SRR5189967;SRR3042542;SRR3042544 |
Length | 21 |
Mature sequence(if miRNA) | 143 - UCUUUCGCGUGGAGGGACGAU - 163 |
Stem-loop(if miRNA) |
--                               CA     A  A          G   ----CA        G   -   GUUG   UCUUUCGCGUGGAGGGACGAUUCACCUUCUU  GCGAC UC ACCGUUGGAU GCG      ACAGAGUU AAA CAG    U   |||||||||||||||||||||||||||||||  ||||| || |||||||||| |||      |||||||| ||| |||   AGAAAGCGCGCCUUCUUGCUAAGUGGAAGAA  CGCUG AG UGGCAACCUA CGC      UGUCUCGA UUU GUC    U AC                               AG     C  C          A   AAAGCG        A   C   AAGU |
Stem-loop sequence | UCUUUCGCGUGGAGGGACGAUUCACCUUCUUCAGCGACAUCAACCGUUGGAUGGCGCAACAGAGUUGAAACAGGUUGUUUGAACUGCUUUAAGCUCUGUGCGAAACGCAAUCCAACGGUCGACGUCGCGAAAGAAGGUGAAUCGUUCUUCCGCGCGAAAGACA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_019854127.1 |
|
2.0 | PREDICTED: Elaeis guineensis transmembrane and coiled-coil domain-containing protein 4-like (LOC105054691), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_010936258.2 |
|
2.0 | PREDICTED: Elaeis guineensis transmembrane and coiled-coil domain-containing protein 4-like (LOC105054691), transcript variant X1, mRNA | NA | coding protein | psRNATarget |