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BaseInfo

ncRNA ID novel_egu_miR372
Species Elaeis guineensis
Class miRNA
Genome position Chr2:3019704-3019866 [-]
Reference genome EG5
Source SRR5189967;SRR3042542;SRR3042544
Length 21
Mature sequence(if miRNA) 143 - UCUUUCGCGUGGAGGGACGAU - 163
Stem-loop(if miRNA) --                               CA     A  A          G   ----CA        G   -   GUUG
  UCUUUCGCGUGGAGGGACGAUUCACCUUCUU  GCGAC UC ACCGUUGGAU GCG      ACAGAGUU AAA CAG    U
  |||||||||||||||||||||||||||||||  ||||| || |||||||||| |||      |||||||| ||| |||
  AGAAAGCGCGCCUUCUUGCUAAGUGGAAGAA  CGCUG AG UGGCAACCUA CGC      UGUCUCGA UUU GUC    U
AC                               AG     C  C          A   AAAGCG        A   C   AAGU
Stem-loop sequence UCUUUCGCGUGGAGGGACGAUUCACCUUCUUCAGCGACAUCAACCGUUGGAUGGCGCAACAGAGUUGAAACAGGUUGUUUGAACUGCUUUAAGCUCUGUGCGAAACGCAAUCCAACGGUCGACGUCGCGAAAGAAGGUGAAUCGUUCUUCCGCGCGAAAGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019854127.1
ncRNA:21   UAGCAGGGAGGUGCGCUUUCU   1
  |||*|||=|||||||||||||
targets:297   AUCCUCCUUCCACGCGAAAGA   317

2.0 PREDICTED: Elaeis guineensis transmembrane and coiled-coil domain-containing protein 4-like (LOC105054691), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010936258.2
ncRNA:21   UAGCAGGGAGGUGCGCUUUCU   1
  |||*|||=|||||||||||||
targets:296   AUCCUCCUUCCACGCGAAAGA   316

2.0 PREDICTED: Elaeis guineensis transmembrane and coiled-coil domain-containing protein 4-like (LOC105054691), transcript variant X1, mRNA NA coding protein psRNATarget