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BaseInfo

ncRNA ID novel_egu_miR356
Species Elaeis guineensis
Class miRNA
Genome position Chr2:42958877-42959039 [+]
Reference genome EG5
Source SRR5189967
Length 24
Mature sequence(if miRNA) 140 - UGAAAAGAUUUUGGGAGGUGGUGU - 163
Stem-loop(if miRNA) --G  U       U         UUUU    A    A  UU   -----------------------------------------U   CCGUGGAGGCGAGC
   UC CCUCUUA AAUUUUUUU    UCAU GUGA GU  GCA                                          GCC              C
   || ||||||| |||||||||    |||| |||| ||  |||                                          |||
   GG GGAGGGU UUAGAAAAG    GGUG CGCU CG  CGU                                          CAC              C
UGU  U       U         UCAU    -    A  -U   CCUUCUUUCUUCUUUGUUUUAUUUUUUUUUAUUAGUUUUAUG   CUAGUCAGUGUUUU
Stem-loop sequence GUCUCCUCUUAUAAUUUUUUUUUUUUCAUAGUGAAGUUUGCAUGCCCCGUGGAGGCGAGCCCUUUUGUGACUGAUCCACGUAUUUUGAUUAUUUUUUUUUAUUUUGUUUCUUCUUUCUUCCUGCUGCAUCGCGUGGUACUGAAAAGAUUUUGGGAGGUGGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010912916.2
ncRNA:24   UGUGGUGGAGGGUUUUAGAAAAGU   1
  ||||||||||||||=||||||||=
targets:869   ACACCACCUCCCAAGAUCUUUUCG   892

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105037225 (LOC105037225), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010912917.2
ncRNA:24   UGUGGUGGAGGGUUUUAGAAAAGU   1
  ||||||||||||||=||||||||=
targets:740   ACACCACCUCCCAAGAUCUUUUCG   763

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105037225 (LOC105037225), transcript variant X2, mRNA NA coding protein psRNATarget