ncRNA ID | novel_egu_miR356 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr2:42958877-42959039 [+] |
Reference genome | EG5 |
Source | SRR5189967 |
Length | 24 |
Mature sequence(if miRNA) | 140 - UGAAAAGAUUUUGGGAGGUGGUGU - 163 |
Stem-loop(if miRNA) |
--G  U       U         UUUU    A    A  UU   -----------------------------------------U   CCGUGGAGGCGAGC    UC CCUCUUA AAUUUUUUU    UCAU GUGA GU  GCA                                          GCC              C    || ||||||| |||||||||    |||| |||| ||  |||                                          |||    GG GGAGGGU UUAGAAAAG    GGUG CGCU CG  CGU                                          CAC              C UGU  U       U         UCAU    -    A  -U   CCUUCUUUCUUCUUUGUUUUAUUUUUUUUUAUUAGUUUUAUG   CUAGUCAGUGUUUU |
Stem-loop sequence | GUCUCCUCUUAUAAUUUUUUUUUUUUCAUAGUGAAGUUUGCAUGCCCCGUGGAGGCGAGCCCUUUUGUGACUGAUCCACGUAUUUUGAUUAUUUUUUUUUAUUUUGUUUCUUCUUUCUUCCUGCUGCAUCGCGUGGUACUGAAAAGAUUUUGGGAGGUGGUGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_010912916.2 |
|
2.5 | PREDICTED: Elaeis guineensis uncharacterized LOC105037225 (LOC105037225), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_010912917.2 |
|
2.5 | PREDICTED: Elaeis guineensis uncharacterized LOC105037225 (LOC105037225), transcript variant X2, mRNA | NA | coding protein | psRNATarget |