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BaseInfo

ncRNA ID novel_egu_miR353
Species Elaeis guineensis
Class miRNA
Genome position Chr16:21132529-21132645 [-]
Reference genome EG5
Source SRR5189967
Length 24
Mature sequence(if miRNA) 1 - CGAAAUCGGAAUGGUCAAAUCCUU - 24
Stem-loop(if miRNA) ---                      -GGGGUG        GU     ---AAAUUAAA  G
   GAUUUGGCCAUUCCGAUUUUGG       UUUGAUUU  AACCG           AU A
   ||||||||||||||||||||||       ||||||||  |||||           ||
   CUAAACUGGUAAGGCUAAAGCU       AGGCUAAG  UUGGU           UA A
UUC                      AAAGCUA        GU     AAAGAUAAAAG  A
Stem-loop sequence GAUUUGGCCAUUCCGAUUUUGGGGGGUGUUUGAUUUGUAACCGAAAUUAAAAUGAAAAUGAAAAUAGAAAUGGUUUGGAAUCGGAAUCGAAAUCGAAAUCGGAAUGGUCAAAUCCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019853185.1
ncRNA:24   UUCCUAAACUGGUAAGGCUAAAGC   1
  ==||||||*|=||||||||||||*
targets:4   GGGGAUUUUAUCAUUCCGAUUUCC   27

3.0 PREDICTED: Elaeis guineensis putative rRNA methyltransferase YlbH (LOC105053467), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010934628.1
ncRNA:24   UUCCUAAACUGGUAAGGCUAAAGC   1
  ==||||||*|=||||||||||||*
targets:4   GGGGAUUUUAUCAUUCCGAUUUCC   27

3.0 PREDICTED: Elaeis guineensis putative rRNA methyltransferase YlbH (LOC105053467), transcript variant X2, mRNA NA coding protein psRNATarget